Pseudomonas fluorescens AU10973, MZ33_RS00155
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain AU10973 Scaffold_110, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGCCCGCGCCCAGTCGGCCCTCGCCGAGGCCCAGGTAACAGTGGATTCCGCCCAGCTCAACCTCGATCGCTCGGTGATCCGCAGCCCCGTGGACGGTT ACGTCAACGACCGTGCGCCGCGCACCCAGGAGTTCGTCACCGCCGGGCGGCCGGTGCTGTCGGTGGTGGACAGCAATTCCTTCCATATCGATGGCTACTT CGAAGAGACCAAGCTCGACGGCATTCACGTCGGCATGAGCGTGGACATCCGTGTGATTGGTGATAACGCCCGCCTGCGTGGCCATGTGCAGAGCATCGTC GCCGGTATCGAGGACCGCGACCGCAGCAGCGGCTCCAACCTGTTGCCCAACGTCAACCCGGCGTTCAGCTGGGTGCGCCTGGCCCAGCGGATTCCGGTGC GTATCGCCTTTGATGATGTACCGGCGGACTTCCGCATGATCGCCGGGCGCACGGCGACGGTGTCGATCATTGGCGACGCAGTCAAAGACGGAGACAAACC
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| DNA Sequence for Gene |
>MZ33_RS00155
ATGAAGCAACTGATGGCAACCGCTGCGTTGGGGTTGTTGCTGTCGGCCTGCCAAGTGGTGGGGCCGGATTACAAGCTGCCGGAGACGTCGGCCGTCAACC GTGGGGACCTGCAAGGGCAACTCGCGGGCGACGGTCACAACGTTGTGTCGGCGCCGGTGCCGGCGGACTGGTGGAAACTCTACAAAGACCCGCGCCTGGA TGAGCTGGTGCGCCAGGCCATGGCTTCCAACACCGACTTGCGTGTGGCCGCGGCCAACCTGCAACGCGCTCGGTTCCAGACCCAGGAAGCTGAATCTGCA GGCGGTTGGAGCGCCGGTGCCAAGGCTGAGGCCCAGCGCCTTCAGGAGTCGGGCGAAGCCTTTCTGCTGACTGAAAAAGTCCCGGTGGCCAACATCGGCA GTGCCAGTATCAGCACGTCCTATCAGTTCGACTTGTTCGGTACCCTGCAGCGCGGCATCGAAAGCGCCCAGGCCAGCGCCGATGCGGCCCAGGCCGCCGC CGACATCGCCCGCATCACGTTGGTCGCGGATGTGGTGCGTTCCTACACCCAGGTGTGTGCGGCCAACGAAGAGCTGGCGATCGCCAACGAGTCCCTCGAC CTGCAGGCCCAGAGCACCAAGCTGACCCAGCGCCTGCGCGACGCCGGGCGTGGTGATGAAACCCAGGTGACCCGTTCGCAGACCCAGTACAAATCCTTGC GCGCCGACATGCCGCGCTACGAAGCGGCACGCCAGGCCGGTCTGTACCGCCTGTCGATGTTGCTGGCCAAGCCGCTGGATCAACTGCCAGCGGGCACCGG CACGTGCGCCGAGCTGCCGCACATCGCCCAGTTGCTGCCGGTCGGTGATGGCGCGACCTTGCTCAAGCGCCGCCCGGATGTACGCCAGGCTGAACGCCAA CTGGCGGCCGCCACCGCGCGAATCGGTGTGGCCACTGGCGCGCTGTACCCAGACATCAGCATCGGCGCCACAGTGGGCACTGTCGGGATTCTCGATGACC TGGGCACACCGGCGACCAACCGCTGGGGTTTTGGCCCGCTGATCAGTTGGTCGGTGCCGACCAACGGCGCACGCGCCCGTATCCATGAAGCCGAAGCCGC AACCCAGGGCGCCTTGGCGCATTTCGACGGCGTGGTGCTCAACGCCATCCGTGAAACCCAGACCGGCCTTGCGCAATACACCGCGCAGTTGCAACGCCGC GACGCCCTGGCCGAAGCCGGCGAGTCCGCCAGGGAGGCCGCAGACCAGACCCATCGCTTCTTCCAGGCGGGTCGCGCGTCATTCCTGGCCGACCTGCAGG CCACCCGCACGTACACCGATGTGCGCGCGCAACTGGCCGCGGCCAACACCCAGGTTGCCATGAGCCAGATCGATCTGTTCCTGGCCCTGGGCGGTGGTTG GGAAAGCGGACGAACGCAAGCGTCTCAGCCCAGCAAACCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAATGACTATGCTTTGACAGGTGGAGCGCCGTGACGCTCTGCCTGTCACTGCTCGCGTTTGCTCATGGGGATTCCAATAATGAAAAACCCTTATGCTC CCGCTTTCTGGTGCGTGTGTTTCGCACTGGTATTGTTGTCGGCTACCTACTTCTACGGCGTCATGCTGGCTCATCAACTCGACAAGGCCATGGTGTTTCT CGACAGCGCCTGCCTGGTGATCGGCACCCTGTCCATCGGCGTCGTGGCCTGGGCCTCTTACCAAAATCAACGGGTGAAGAAAAAGCTCCTCGAACAAGGC AAGACCCGCGTGGCGATCTGGGACACCAAGGTTGCGTTGCGCCGGGTCGAGACCGTGTTCGACCGCTATTTCTGGGGCAGCTATTGGCAGCCGGGGCGGA CCTTCCAGGAAGTCATGGGCGACCTCACTGGCACACCCCTGGAAAAAAGCCTCGAAGTCCTGAAAAAACAGTGCGTGGCCCTCGACCGGCAAGTGGCCGA
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| Amino Acid Sequence |
>RND transporter
MKQLMATAALGLLLSACQVVGPDYKLPETSAVNRGDLQGQLAGDGHNVVSAPVPADWWKLYKDPRLDELVRQAMASNTDLRVAAANLQRARFQTQEAESA GGWSAGAKAEAQRLQESGEAFLLTEKVPVANIGSASISTSYQFDLFGTLQRGIESAQASADAAQAAADIARITLVADVVRSYTQVCAANEELAIANESLD LQAQSTKLTQRLRDAGRGDETQVTRSQTQYKSLRADMPRYEAARQAGLYRLSMLLAKPLDQLPAGTGTCAELPHIAQLLPVGDGATLLKRRPDVRQAERQ LAAATARIGVATGALYPDISIGATVGTVGILDDLGTPATNRWGFGPLISWSVPTNGARARIHEAEAATQGALAHFDGVVLNAIRETQTGLAQYTAQLQRR DALAEAGESAREAADQTHRFFQAGRASFLADLQATRTYTDVRAQLAAANTQVAMSQIDLFLALGGGWESGRTQASQPSKP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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