Pseudomonas fluorescens AU10973, MZ33_RS26560

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas fluorescens strain AU10973 Contig_28, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TTATCCGAGCTGCGGCCGATAGCCATCACGCCCTGGTTCATGGACTTTTCGGAGCACTGCCCAGGGGTAATCTTGTGATAACTAGTGATAGTCAAACACA GCGACATCTTGCCTCCTTGCTGATACTTCGCGCACGGTCGATTCCAGGGACAGCGCCTCCCGGGATATCGCCATCGGTCGAACAATCGACCGTCTAAAAC CTGCCAATGCCAGCATGATCGCTGATCTTAACTGGGCTCTATGACAAAAATCCTGTCCCGGTGCGTCGTTCGACTCACCAGTCGCGCAGGTTGTTAAGCA CCGCACATCTGTCACAGAGGGCGAATAGCTTACCTTGACAAGGCCTAAGTACTACACCAAAAATGCACAACTTCTTGAATACCAGTGATGGCACATTAGT GGCGCCTCGCTTATATGACCAAGAAAACATGCAAAGTTCCTCGCGCAACTAATGCATGAATTGCCCGCCATCTAACGGGCTGATAGGGAGATCAAATTCA
DNA Sequence for Gene
>MZ33_RS26560
GTGGATGTGCCGTTGCTGCTCACCGCCGTTTCCGCGACTTCGCCCTGTGGCGAAGACATGGAATATGACGCGCAATTTCTGCAGTTGGAGCGTGATGCCA AGGGCCAACCCGAGCGCAGCATGGGCGACTCGATCCTGCCCGCTGAACCGCCGGAATGGCGCAGCATCCAGCAGCAAAGCCTCGACTTGCTCGCACGCAG CAAAGACCTGCGTATCACCCATTTCCTGTTGCAAAGCGCCCTCGCCCTCCAGGGTGTGGCCGGCCTGGCGCAAGCGCTGACGCTGATCGATGCCTTGCTG CGCGACTACTGGGCCGACCTGCATCCGCGCCTGGACGCCGACGACGATAACGATCCCACCGTGCGCATCAACGCCCTCACCGGCTTGACCTGCGACACCA ATATTCGCCTGCTGCGCGAAAGTGTCCTCACACGCTCACGCACCTTCGGCCCCGTGACCCTGCGCGCGGCGCTCAACGCCAGTGGCCTGTTGAGCTTTCC CGATGAACAGCTCGGCGCCCAGCAGCTCAACGCCGCGTTCCTCGACAGCGACCCCGAGCAACTGCAGGCTACCCGCGACGCCCTGATTGCAGCGCGTGCG GCGTGCGAAGCCATCGAACAACAGGTCAACGACCAGGTCGGTTCCGCCCAGGGCGTGGACCTCAGTGCCCTGAAGCAACCGCTCAAGCAGGCGTTGCAGA TACTCAATCAAGCGGTGCCAGGCACCGCCGGCAGCAGCGAACCCGAGGCCGTCAGTGACGACAATGCCCCCTCGGTCGACGTCGCCGCCGCCCCCGCAGC ACAGCGCCCCGTTGGCGATATCGCCAGCCGCGACGATGTGCTGCGCAGCCTCGACAAGATCCTTGCGTACTACACCCGGCACGAGCCTTCGAGCCCGCTG CCGGTGCTGTTGAACCGGGCGAAGAATCTGGTGCACGCCGACTTCGCGGCCATCGTGCGCAATCTGATTCCCGACGGCATGTCCCAATTTGAAAACCTGC GTGGCCCGGACGGCGAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCGCTCGACTGCGCAGTAACAACACCGTCGCTCAAGCGACCAGGAGCAGCAACGTGGCGAAGCAAAGTTCTCAGAAATTCATCGCGCGCAACCGCGCGC CTCGAGTGCAGATCGAGTACGACGTCGAGCTCTACGGCGCCGAGAAAAAGGTCCAGCTGCCCTTCGTGATGGGCGTGATGGCCGACCTCGCCGGCAAGCC TGCCGAGCCTTTGGCGCCGGTGGCCGACCGCAAATTCCTTGAAGTGGACGTCGATAACTTCGACTCGCGCCTCAAGGCCATGCAGCCGCGCGTGGCGTTC CACGTCCCTAACGAGCTGACCGGCGAAGGCAACCTGAGCCTGGACATCACCTTCGAAAGCATGGACGACTTCAGCCCGGCCGCCGTGGCCCGCAAGGTCG ACTCGCTGAACCAACTGCTCGAAGCCCGCACCCAGCTGGCCAACCTGCTGACCTACATGGACGGCAAGACTGGCGCTGAAGAAATCATCATGAAGGCGAT
Amino Acid Sequence
>type VI secretion protein ImpA
MDVPLLLTAVSATSPCGEDMEYDAQFLQLERDAKGQPERSMGDSILPAEPPEWRSIQQQSLDLLARSKDLRITHFLLQSALALQGVAGLAQALTLIDALL RDYWADLHPRLDADDDNDPTVRINALTGLTCDTNIRLLRESVLTRSRTFGPVTLRAALNASGLLSFPDEQLGAQQLNAAFLDSDPEQLQATRDALIAARA ACEAIEQQVNDQVGSAQGVDLSALKQPLKQALQILNQAVPGTAGSSEPEAVSDDNAPSVDVAAAPAAQRPVGDIASRDDVLRSLDKILAYYTRHEPSSPL PVLLNRAKNLVHADFAAIVRNLIPDGMSQFENLRGPDGE
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site