Pseudomonas aeruginosa PA7, PSPA7_1649 (rhlR)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa PA7 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GGTCCACCCGGCCGGCATCGGCGCCATGAGCCTGGCGCTGGCGGCGGGGGTGCCGCAGGTGCTGCTGCCTTGCGCCCACGACCAGTTCGACAACGCCGAA CGCCTGGTCCGCCTCGGCTGCGGTATCCGCCTGGGCCTGCCGCTACGCGAGCAGGCGCTGCGCGAGTCGCTCTGGCGGCTGCTCGAGGACCCGGCGCTGG CGGCGGCCTGTCGGCGTTTCATGGAATTGTCACAACCGCACAGTATCGCTTGCGGTAAAGCGGCCCAAGTGGTCGAACGTTGTCATAGGGAGGGGGATGT GCGATGGCTGAAAGCCGCGTCCTGAGCCGTGCTGGCATAACAGATAGGATTGCCATGGTTTTGCCGTGTCGGCAAGGGAGCACGCTTGACAGCGCCATAC CCCGGGCCAATTCTGCTGCGATGCATTTTATCGATCAGGGCTTACTGCAATGAGGAACGACGGAGGCTTTTTGCTGTGGTGGGACGGTTTGCGGAGCGAG
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| DNA Sequence for Gene |
>PSPA7_1649
|rhlR
ATGCAACCGATCCACGACAGCCAGGGCGTGTTTGCCGTCCTGGAAAAGGAAGTGCGTCGCCTGGGCTTCGATTATTACGCCTATGGGGTGCGCCACACGA TTCCCTTCACCCGGCCGAAGACCGAGGTGCACGGTACCTATCCCAAGGCCTGGCTGGAACGCTACCAGATGCAGAACTACGGGGCGGTCGACCCGGCGAT CCTCAATGGCCTGCGCTCCTCGGAAATGGTGGTCTGGAGCGACAGCCTGTTCGACCAGAGCCGGATGCTCTGGAACGAGGCCCGCGACTGGGGCCTGTGC GTCGGCGCGACCTTGCCGATCCGTGCGCCGAACAACCTGCTCAGCGTGCTTTCGGTGGCGCGCGACCAGCAGAACATCTCCAGCTTCGAGCGCGAGGAAA TCCGCCTGCGGCTGCGCTGCATGATCGAGCTGCTGACCCAGAAGCTGACCGACCTGGAGCATCCGATGCTGATGTCCAACCCGGTCTGCCTCAGCCACCG CGAGCGCGAGATCCTGCAATGGACCGCCGACGGCAAGAGCTCGGGAGAAATCGCGATCATCCTGAGCATTTCCGAGAGCACGGTGAACTTCCACCACAAG AACATCCAGAAGAAGTTCGACGCGCCGAACAAGACCCTGGCCGCAGCCTACGCCGCCGCGCTGGGGCTTATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACGGAGGGCGCGCCAGTCGGCGCGCCCTACCAGATCTGGCAGGTTGCCTGCCGTTCATCCTCCTTTAGTCTTCCCCCTCATGTGTGTGCTGGTATGTCCT CCGACTGAGAGGGCCCAGGAGTACAGGGGTAGGGATGCCGCCTTTTTTTCTCGGCCGGCACGACACGGGGACTGGTCATGATCGAATTGCTCTCGGAATC GCTGGAAGGGCTTTCCGCCAGCATGATCGCCGAGCTGGGACGCTACCGGCACGAGGTCTTCATCGAGAAGCTGGGTTGGGACGTGGAGTCCACCTCCAGG ACCCGCGGCCAGGAGTTCGACCAGTTCGACCATCCGCAAACCCGCTACATCATCGCCAGGAGCCCGCGCGAAGGCATCTGCGGCTGCGCCCGCCTGCTGC CGACCACCGAGGCCTACCTGCTCAAGGACGTCTTCGCCTACCTGTGCAGCGAGACCCCGCCGAGCGATCCGTCGGTCTGGGAGCTCTCGCGCTACGCCGC
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| Amino Acid Sequence |
>transcriptional regulator RhlR
MQPIHDSQGVFAVLEKEVRRLGFDYYAYGVRHTIPFTRPKTEVHGTYPKAWLERYQMQNYGAVDPAILNGLRSSEMVVWSDSLFDQSRMLWNEARDWGLC VGATLPIRAPNNLLSVLSVARDQQNISSFEREEIRLRLRCMIELLTQKLTDLEHPMLMSNPVCLSHREREILQWTADGKSSGEIAIILSISESTVNFHHK NIQKKFDAPNKTLAAAYAAALGLI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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