Pseudomonas fluorescens C2, NL64_RS08770
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATTCGCATCACCCGCATGCGCGCTTAAGCCAGCCCCTTACAAGGAGTCATTCATGACCAAGACTGTTATCACCAGCGACAAGGCCCCGGCCGCCATCGG TACTTACTCCCAGGCGATCAAGGCTGGCAACACCGTTTACATGTCGGGTCAAATCCCCCTGGACCCAAAAACCATGGAACTGGTTGAAGGCTTCGAAGCC CAGACCGTCCAGGTGTTCGAGAACCTCAAGGCCGTGGCTGAAGCTGCCGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGA GCCACTTCGCCAAGGTCAACGAGATCATGGGCAAGTACTTCGACCAGCCTTACCCAGCGCGCGCCGCCATCGGCGTTGCCGCCCTGCCAAAGGGTTCGCA GGTTGAAATGGATGCCATCCTGGTCATCGAGTAATGCGTCCGGCGCAGCTCAGGCTGCGCCGACTGCTCTGCTGTAAAGAAAGCTTGAAAGGATTCCACC
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| DNA Sequence for Gene |
>NL64_RS08770
ATGCGCAAAGCGCTTGCTCTCTCGCTGCTCGCCCTGCTTTTGGGCGGATGTGCCAGCGACCCTGCCAGCCGTGATATCAGCGGCACCTGGATCAACCAGG CGGCGATTGATGCTGCATCCAAAGGCGCTCCCCTGCGTGAAGCGCTCCAGGCCTATGGTCCGAACCTGGAATGGGACGTCAACACCAAGGCCGGTCAGGC CCGCTACACCAATGGTTTTGAAAATGTCGACGGCAAGCTGCTGGGTGAACAGTCCGGCGCCTGGAAAGTCGACTTTTATGGCAGTTCCGGCAGCGAACTG AAGCGCGACGGCAAGCAACTGAGCCAGGCCGCGCTCGATAACGAACCCGCCCAGGTCTTCGACCGTGCATCGGTTCAGGTGCCGGACGGCGCGCCACTCG GCGCCAGCTTCGAACGTGCGCTGTATTCGGCCTACATGGGCGGCAACTGGAAAGTCATCAGCGGCCCCGGCGAAGGCAATACCGTGCAGTTTCAGGCTGA CGGCCAGGTGACCGGTTTGCCGGGCAGCGACCGCTACGCCCTGTGTTTGGCGGGTGATTGCGCATCGATGAGCGGCGGCAACGACAACATGTGGCTGCAA CTCAACGGGCAAGGAAACGCCTGGATCTTTATGCGCAAAGGCAAGGAACTGGAGATTCTCCAAGCTGTAAATACGGCGCAAGCAGACGAAATGCCTCAGT TCACGCCGGGTGATCGCAAGTGGTTGCTGGAAAAACAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGCTGAAAAGATCGCAGCCTTCGGCAGCTCCTACAGGTGTACGCATTCCCTGAAGGAGCTGCGGAACGCTGCGATCTTTTGCTTTCAGCGCCCCTCAA TAATCGCGGCATAACCTTCGCGGAAACTCGGATACCTTGGCGTCCAGCCCAACGCTTTCGCCCGCGCATTGCTGCAACGCTTGCTCCCGGTGCGACGCAC GCTGGCGTCTTCCGCCCATTCCGTGACACCCAGATACTCGCGCAACCAGCCCACCACATCCGCCAACGCTGCCGGCGCGTCATCAACGCCGATATAGACG TCATCCAGCGCCACACCCTGGCGATCCGCCTCAAGCAGACAGGCCATCAGCCCTGCGGCGTCATCGGCATGAATCCGGTTGGCGTACAACGGTGGATCGA CTACCACGCGATAACCCCGACGGACTTGGGTCAGCAACCACTCACGGCCCGGGCCGTAGATGCCGGTCAAGCGCACGATACTGGCCGGGATGCCACTATT
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| Amino Acid Sequence |
>lipoprotein
MRKALALSLLALLLGGCASDPASRDISGTWINQAAIDAASKGAPLREALQAYGPNLEWDVNTKAGQARYTNGFENVDGKLLGEQSGAWKVDFYGSSGSEL KRDGKQLSQAALDNEPAQVFDRASVQVPDGAPLGASFERALYSAYMGGNWKVISGPGEGNTVQFQADGQVTGLPGSDRYALCLAGDCASMSGGNDNMWLQ LNGQGNAWIFMRKGKELEILQAVNTAQADEMPQFTPGDRKWLLEKQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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