Pseudomonas fluorescens C2, NL64_RS08760
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_8, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTGCTCGATTGATTTGCACTTCCCAAAACCGCTGCAAGGGCTTTACATTGGTGCTTGCAGCGCGTTGAAGGGCTTGATCAAAAAATCAGCGCTTCCCTAA TCGCTGGTGATTTTTTAAACTGTTGAGTCCGCTCGCCCATCCGGGCAGCGCGCATATTGCATTTGCTACGAGGAAGACCATGGCCCGCGTAACCGTTGAA GACTGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGCCCGTCAACTGGCCACCGGCGGCAAAGAGCCGAAAGTAGCAT GGGAAAACGACAAGCCTACCGTCGTCGCCCTGCGTGAAATCGCTGAAGGCCTGATCGACTACGCAGCTATCGCCGAAGCCGAAATCGTTGAAGATGAACC GCTTTTTGCTGCATTCGAGGACGAGTCCAACGAGGCCGTCTAAGCCTATGCCTGGTCGACGTAGCACGGCGCGGGATAAAAGCTTACGGCAGGAGTCATC
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| DNA Sequence for Gene |
>NL64_RS08760
ATGCCGAGCATAGACGCCCTCGCCGATCGCTTATCGACCTACCTCGGCAAAGACCAGGTCAACCTGGTCCGCCGAGCGTATTTCTACGCCGAACAAGCCC ACGACGGCCAACGCCGCCGTAGCGGTGAGGCGTACGTCACGCACCCACTCGCGGTTGCGAATATTCTTGCCGACATGCATATGGACCATCAGAGCTTGAT GGCCGCCATGCTGCATGACGTGATCGAAGACACCGGGATTGCCAAGGAAGCGCTACAAGCGCAGTTCGGCGAAACCGTGGCCGAACTGGTCGACGGGGTC AGCAAACTGACCCAGATGAACTTCGAGACCAAGGCCGAAGCCCAGGCCGAAAACTTCCAGAAAATGGCCATGGCCATGGCGCGCGACATTCGCGTGATCC TGGTCAAGCTGGCCGACCGCCTGCACAACATGCGCACGCTGGAAGTGCTGTCCGGCGAGAAACGCCGACGCATCGCCAAGGAAACCCTGGAAATCTATGC ACCCATCGCCAACCGGCTGGGCATGCACGCCATCCGCATAGAATTCGAAGACCTCGGCTTCAAGGCCATGCACCCGATGCGTTCCGCGCGGATCTACCAG GCGGTCAAACGCGCCCGGGGCAACCGCAAGGAAATCGTCAACAAGATCGAAGAATCCCTCAGCCACTGCCTGGCCGTCGACGGCATTCAGGGCGAGGTCA GCGGTCGCCAGAAACACCTCTACGGCATCTACAAGAAAATGCGCGGCAAGCGTCGGGCCTTCAACGAAATCATGGACGTCTATGCGTTCCGGATCATCGT CGACAAGGTCGATACCTGCTACCGCGTGCTGGGTGCTGTGCATAATTTGTACAAACCGTTGCCGGGGCGCTTCAAGGATTACATCGCGATCCCCAAGGCC AACGGCTATCAGTCGCTGCACACCACGTTGTTCGGCATGCACGGCGTTCCGATCGAGATCCAGATTCGCACCCGTGAAATGGAGGAGATGGCCAACAACG GCATCGCCGCCCATTGGCTGTACAAATCCAGCGGCGACGAGCAGCCAAAAGGCACTCACGCCCGCGCCCGCCAATGGGTCAAAGGCGTGCTGGAAATGCA GCAACGCGCCGGCAACTCGCTGGAATTCATCGAGAGCGTGAAGATCGACCTGTTCCCGGACGAGGTCTACGTGTTCACGCCCAAAGGCCGGATCATGGAG CTGCCCAAGGGCTCCACGGCGGTCGACTTCGCTTACGCGGTGCACACCGACGTGGGCAACAGCTGCATTGCCTGTCGGATCAATCGCCGTCTCGCACCGC TGTCCGAACCGTTGCAAAGCGGCTCCACGGTCGAGATCGTTAGCGCTCCAGGCGCCCGGCCGAACCCGGCATGGCTCAACTTCGTGGTCACCGGCAAGGC GCGTACGCACATCCGCCATGCGCTGAAACTGCAGCGCCGCTCCGAATCCATCAGCCTCGGCGAACGCCTGCTGAACAAGGTCCTCAACGGCTTCGACAGC TCGCTGGAAAAAATCCCGCAAGAGCGCGTCAAGGCCATGCTCACCGAGTATCGCCTCGAACTCATCGAAGACCTGCTGGAAGACATCGGCCTGGGCAATC GCATGGCCTACGTTGTCGCCCGCCGTCTGCTCGGCGAAGGCGAACAGTTGCCGAGCCCGGAAGGTCCGCTGGCGATTCGCGGTACCGAAGGCCTGGTACT CAGCTACGCCAAGTGCTGCACGCCGATCCCGGGCGACCCGATCGTCGGTCACTTGTCCGCGGGCAAAGGCATGGTTGTGCACCTGGACAACTGTCGCAAC ATCAGCGAAATCCGCCACAACCCGGAAAAATGCATCCAGCTCTCGTGGGCCAAGGATGTCACCGGCGAATTCAACGTCGAGCTACGCGTCGAGCTGGAAC ACCAGCGCGGCCTGATCGCCCTGCTGGCCAGCAGCGTCAACGCAGCCGACGGCAATATCGAAAAAATCAGCATGGATGAACGCGATGGTCGCATCAGCGT GGTCCAACTGGTGGTCAGCGTACACGACCGTGTGCACCTGGCCCGCGTGATCAAGAAACTGCGCGCCTTGACCGGAGTAATTCGCATCACCCGCATGCGC GCTTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCCAGCCCCTTACAAGGAGTCATTCATGACCAAGACTGTTATCACCAGCGACAAGGCCCCGGCCGCCATCGGTACTTACTCCCAGGCGATCAAGGCTGGC AACACCGTTTACATGTCGGGTCAAATCCCCCTGGACCCAAAAACCATGGAACTGGTTGAAGGCTTCGAAGCCCAGACCGTCCAGGTGTTCGAGAACCTCA AGGCCGTGGCTGAAGCTGCCGGCGGTTCGTTCAAGGACATCGTCAAGCTGAACATCTTCCTCACCGACCTGAGCCACTTCGCCAAGGTCAACGAGATCAT GGGCAAGTACTTCGACCAGCCTTACCCAGCGCGCGCCGCCATCGGCGTTGCCGCCCTGCCAAAGGGTTCGCAGGTTGAAATGGATGCCATCCTGGTCATC GAGTAATGCGTCCGGCGCAGCTCAGGCTGCGCCGACTGCTCTGCTGTAAAGAAAGCTTGAAAGGATTCCACCATGCGCAAAGCGCTTGCTCTCTCGCTGC
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| Amino Acid Sequence |
>(p)ppGpp synthetase
MPSIDALADRLSTYLGKDQVNLVRRAYFYAEQAHDGQRRRSGEAYVTHPLAVANILADMHMDHQSLMAAMLHDVIEDTGIAKEALQAQFGETVAELVDGV SKLTQMNFETKAEAQAENFQKMAMAMARDIRVILVKLADRLHNMRTLEVLSGEKRRRIAKETLEIYAPIANRLGMHAIRIEFEDLGFKAMHPMRSARIYQ AVKRARGNRKEIVNKIEESLSHCLAVDGIQGEVSGRQKHLYGIYKKMRGKRRAFNEIMDVYAFRIIVDKVDTCYRVLGAVHNLYKPLPGRFKDYIAIPKA NGYQSLHTTLFGMHGVPIEIQIRTREMEEMANNGIAAHWLYKSSGDEQPKGTHARARQWVKGVLEMQQRAGNSLEFIESVKIDLFPDEVYVFTPKGRIME LPKGSTAVDFAYAVHTDVGNSCIACRINRRLAPLSEPLQSGSTVEIVSAPGARPNPAWLNFVVTGKARTHIRHALKLQRRSESISLGERLLNKVLNGFDS SLEKIPQERVKAMLTEYRLELIEDLLEDIGLGNRMAYVVARRLLGEGEQLPSPEGPLAIRGTEGLVLSYAKCCTPIPGDPIVGHLSAGKGMVVHLDNCRN ISEIRHNPEKCIQLSWAKDVTGEFNVELRVELEHQRGLIALLASSVNAADGNIEKISMDERDGRISVVQLVVSVHDRVHLARVIKKLRALTGVIRITRMR A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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