Pseudomonas fluorescens C2, NL64_RS05245
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAAACTGGCGGTATTCGACGTCGACGGCGTACTGACCGATGGTCGCTTGTACTTCCTCGAAGACGGCAGCGAGTTCAAGACCTTCAACACTCTCGACG GCCAAGGCATCAAGATGCTGATGGCAGCCGGCGTGCAGACCGCGATTATCAGCGGTCGCAAAACCCCAGTCGTAGAACGACGGGCGAAGAATCTGGGCAT TCCGCACCTTTACCAGGGTCGCGAAGACAAACTGGTGGTGCTCGACGAGCTTCTGGGCCAACTCAACCTAAGCTATGAACAGGTCGCCTACCTCGGCGAC GACCTGCCCGACCTGCCGGTGATTCGCCGCGTCGGCCTGGGCATGGCAGTGGCCAACGCCGCCAGCTTCGTGCGTGAACACGCTCACGGCGTGACTCAGG CCCGCGGTGGCGAGGGTGCCGCCCGCGAATTCTGCGAATTGATCCTGCGCGCCCAGGGCCGCCTCGATGCGGCCAACGCCGCGTACCTGTGAGCCAAACC
|
|
| DNA Sequence for Gene |
>NL64_RS05245
ATGTTGAGCAAAAAGATTCGCAACATATTGGTGTTCGGTTCCATCACGGCGATTTTCGCTGCGGTCGGCTACTGGAACATCAGCCCGGAACGCTTCCTCG ACAAGCCAGTGGTGAAAGTCGACGAAAGCGCGATCGACTATTACGCCATCAACGCCCACAGCGTGCAGTTCCTGCCGGATGGCAAACTGCAATACGAGAT GACGTCCGATAAAGTCGAACACCTGAAAGCAACCGAAGTGACGCTGCTGACCAACCCCGACCTGAACATGTTCCGCGGTACGGAGTTCCCGTGGCACGTC CAGAGCGAAAAGGGTGAAGTCAATCCGGACGGTACACAGGTTGAACTGATCGACTCGGTACGCATCACGCGTTTCGACGAAAAAAACCGCAGAACCCTGA TCACCACCACTCGCATGACCGTGTTCCCGCAACAGCAATATGCGCAGACCGAGCAACCCGTTAGAATCGACGGCGCTGGCGGTGTATCGACTGGTAACGG AATGAAAGCGTATTTGAAAGAAAGCAGGATACACCTGCTATCGAACGTAAGAGGACAGTATGAGGCTCGTTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AACCCTCCCTATTTTGCTCAGTCTGGGCGCAGCACTGGGAAGCGTGAGCGCCTGGGCTCTGCCGGACGATCAACAACAGCCTATCCGCATTCAGGCCGAC GACGCCCAACTGGACGACAAGAACGGCATTGCCACCTACACCGGTGACGTGATCATCACTCAGGGCTCTATGAAGGTTACCGGCAACAAGGTGACCATGA CCCGCACCCCGAACGGCGATATCGACGTGGTGACCTCGGTGGGCAACCTGGCTTATTTCGAGCAGTTGCAAACGGCAGGCGATACCAAGCCGGTCCAAGG CTACGGCGTCACCATCCAGTATCACGCCTCGCAAAATCGCGTCGTGCTGATCGATCGCGCCAAAGTGATCGACAAGGACAACAACGTCACCCAGGGCGAG AAAATCGTCTACGACACCGAGAAAAAGCTCGCCAGCGCCGGTCGCGCTACCGGCAGCAAGGTGACCGAGTCGCGTCCGCGCATCGACATGGTGATCCAGC
|
|
| Amino Acid Sequence |
>lipopolysaccharide ABC transporter permease
MLSKKIRNILVFGSITAIFAAVGYWNISPERFLDKPVVKVDESAIDYYAINAHSVQFLPDGKLQYEMTSDKVEHLKATEVTLLTNPDLNMFRGTEFPWHV QSEKGEVNPDGTQVELIDSVRITRFDEKNRRTLITTTRMTVFPQQQYAQTEQPVRIDGAGGVSTGNGMKAYLKESRIHLLSNVRGQYEAR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|