Pseudomonas fluorescens C2, NL64_RS04650

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:3.30.450.20	PAS domain	-	-	304	418	1.6E-12
NCBIfam	TIGR00254	JCVI: diguanylate cyclase (GGDEF) domain	IPR000160	GGDEF domain	428	590	6.2E-43
SMART	SM00267	duf1_3	IPR000160	GGDEF domain	420	592	2.9E-66
CDD	cd01949	GGDEF	IPR000160	GGDEF domain	432	590	4.92695E-63
SUPERFAMILY	SSF55785	PYP-like sensor domain (PAS domain)	IPR035965	PAS domain superfamily	302	418	1.31E-13
SUPERFAMILY	SSF141868	EAL domain-like	IPR035919	EAL domain superfamily	607	847	3.27E-90
FunFam	G3DSA:3.30.70.270:FF:000001	Diguanylate cyclase domain protein	-	-	426	593	3.4E-42
Pfam	PF00990	Diguanylate cyclase, GGDEF domain	IPR000160	GGDEF domain	432	587	5.4E-49
CDD	cd01948	EAL	IPR001633	EAL domain	608	843	1.21609E-114
CDD	cd00130	PAS	IPR000014	PAS domain	322	417	0.00152162
Gene3D	G3DSA:3.30.70.270	-	IPR043128	Reverse transcriptase/Diguanylate cyclase domain	430	601	9.2E-58
PANTHER	PTHR44757	DIGUANYLATE CYCLASE DGCP	-	-	299	851	0.0
Gene3D	G3DSA:3.20.20.450	EAL domain	IPR035919	EAL domain superfamily	602	857	1.8E-99
FunFam	G3DSA:3.20.20.450:FF:000001	Cyclic di-GMP phosphodiesterase yahA	-	-	603	854	1.0E-88
Pfam	PF00563	EAL domain	IPR001633	EAL domain	609	839	7.7E-74
Pfam	PF05228	CHASE4 domain	IPR007892	CHASE4	70	227	6.9E-21
SMART	SM00052	duf2_2	IPR001633	EAL domain	602	844	6.8E-116
NCBIfam	TIGR00229	JCVI: PAS domain S-box protein	IPR000014	PAS domain	310	426	1.8E-9
SUPERFAMILY	SSF55073	Nucleotide cyclase	IPR029787	Nucleotide cyclase	436	593	1.18E-49
SMART	SM00091	pas_2	IPR000014	PAS domain	313	379	2.8E-5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.