Pseudomonas fluorescens C2, NL64_RS26445
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_36, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTTTGACTATCGCCGATCATCAAGGTGTAGCTCATGCGTAATCTCAAGCGAGTGCTTCTTGGGGTCTTCGTGCTTGTACTGGTACTGGCGATTCTCGCGT TCGTTCTCGAAAATCAACAATCGGTTTCTCTGTCGTTTCTCGGTTGGGCCGGGCCGCAATTGCCAGTTTCTCTGGTGATGGTTCTCGCGCTATTGATCGG TATGGTGATCGGGCCGATACTTGGCTGGTTTCTGGGGCGCTCGTCCAGGGTTTCACGCAAGCGTCTTGTTTGATTGTGATTAAAGCGGGGCGCAAATTGA ATTTGCACCTAGGCTCGTCCGCATCCATTAGTAAAACTGTCATTAAGCTGTAAAATGCTGCGCTTATCCGATAACGGCATATTCCTGCATCGGTTCCGAA TGACTGTCAGAAGTCACAGCTGACTTTATGGCGTTTGCATTCACGGATTGGACAGTGCTCGGTTGGCGGTCCTGTCAGTAACTAAAGGGTATGGTTTAGC
|
|
| DNA Sequence for Gene |
>NL64_RS26445
GTGAAAATTCTAGTAACCGGCGGCGCCGGGTTTATCGGCTCGGCAGTCATCCGTCATATCATCTCCGACACTACCGATGCTGTCGTTAACGTCGATAAGC TGACTTACGCCGGTAACCTTGAGTCATTGGCCGAAGTTAGTCAGAACTCGCGTTACATATTCGAACGCGTCGATATCTGCGACCGCAGTCAAGTCGACCG CGTCCTGCGTGAGCACCAGCCGGATGCGATCATGCACCTAGCCGCAGAGTCCCATGTCGACCGCTCAATTTCTGGTCCGTCTGAATTCATCCAGACCAAC ATCATCGGCACTTATACCTTGCTCGAAGCTGCGCGACACTATTGGGCTGCGCTGGACGATGCGCGTAAAGCCAACTTCCGCTTTCACCATATTTCGACTG ACGAAGTTTACGGAGACCTTGAAGGTCCGGAAGACCTCTTCACCGAAACCACGCCGTATCAGCCAAGTTCACCATACTCCGCCAGCAAGGCCAGTTCCGA TCACCTGGTTCGCGCATGGAGCCGTACTTACGGCCTGCCGATGTTGGTTACCAACTGCTCGAACAACTACGGCCCATGCCACTTCCCTGAGAAGTTGATC CCGCTGATCATTCTCAATGCACTGGAAGGCAATCCACTGCCGGTCTACGGCAAAGGCAACCAGGTCCGCGACTGGCTCTACGTCGAAGACCACGCCCGCG CACTGTACAAAGTCGTGACCGAAGGTGTGATCGGCGAGACGTATAACATCGGTGGCCATAACGAAAAGCAAAACATCGAAGTAGTGCATACCCTGTGTGC ACTGCTCGACGAACTTCGTCCCGATTCTGCTCACCGCCCACATGCCAGCCTGATCACCTACGTTCAGGATCGCCCAGGGCACGACCAGCGTTACGCGATT GACGCAAGCAAAATCCAGCGTGAACTGGGTTGGACGCCGGAAGAAACGTTTGAAACCGGTATCCGCAAAACGGTCGAGTGGTACCTCAACAACACTGAAT GGGTCGCTCACGTGAAGAGCGGTAGCTACCAGCAGTGGATCGATCAGAACTACACAGATCGCTCGAGCAAGGAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AAATACTTCTGCTCGGAAAGAACGGCCAGGTAGGCTGGGAGCTGCAGCGTTCCCTCGCGCCGCTTGGCGAGTTAATCGCCCTTGATCGCCATGCGGTCGA TTGCTTGTGCGGTGACCTGTCTAATCTCGACTCGTTGCGCGCGACCATTCGAAGGGTCATGCCCGACATTATCGTCAACGCTGCTGCCTATACCGCAGTT GACAAGGCTGAGTCTGAAGCTGAGCTGGCTGAATGTGTGAACGGTCATGCCTGCCATGTGATGGCTGAGGAGGCCGCGTCTATAGATGCCTGGCTGATTC ATTACTCGACCGACTACGTCTTCAGTGGCCATGGTTCGGCACCCTGGAAGGAGACCGATGCGGTTGCGCCCTTGAGCCAATATGGCATCAGTAAAGTGGC TGGCGAACGCGCGATTCTCTCGTCCGGTTGCAAGCACCTAATCTTTCGCACAAGTTGGGCTTATGGCACTCGTGGCCATAACTTCGCCAAGACCATGCTG
|
|
| Amino Acid Sequence |
>dTDP-glucose 4,6-dehydratase
MKILVTGGAGFIGSAVIRHIISDTTDAVVNVDKLTYAGNLESLAEVSQNSRYIFERVDICDRSQVDRVLREHQPDAIMHLAAESHVDRSISGPSEFIQTN IIGTYTLLEAARHYWAALDDARKANFRFHHISTDEVYGDLEGPEDLFTETTPYQPSSPYSASKASSDHLVRAWSRTYGLPMLVTNCSNNYGPCHFPEKLI PLIILNALEGNPLPVYGKGNQVRDWLYVEDHARALYKVVTEGVIGETYNIGGHNEKQNIEVVHTLCALLDELRPDSAHRPHASLITYVQDRPGHDQRYAI DASKIQRELGWTPEETFETGIRKTVEWYLNNTEWVAHVKSGSYQQWIDQNYTDRSSKE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|