Pseudomonas fluorescens C2, NL64_RS23920
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_31, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGTGCGCGGTGATTCCGTTGATGCTGACCTCCATCCTCTGCGAAGCCTTGATGGTCTGGCTGAACATCGGTGTGAAAGTCGCCACGCTGCCGGTGATC GCCTTGGGTGTGGGCATCGGTGTCGATTACGCGTTGTACGTGATGAGCATCCTCCTGGGCCATCTGCGCCAAGGGGCGAGCCTGTCCGAAGCCTATTACC GCGCGCTGGTTTCCACCGGCAAGGTGGTGATGTTGACCGGTATTACCCTGGCCATCGGCGTGGCGACCTGGACATTCTCCCCGATCAAGTTCCAGGCCGA CATGGGCGTGCTGCTGGCCTTCATGTTTGTCTGGAACATGGTCGGTGCCCTGGTGTTGCTGCCGGCGCTGGCGTACTTCCTGTTACCCGCACGCAGCGCG GCGCAGGGAGCCGATCTGCCGATGACTGTGAGCAACGGGGCGGTTTCTGAGGCGGCTGTCGTTGCGAGCGCTCGTCACCTGCGCATCAAGGAGCAGTGCC
|
|
| DNA Sequence for Gene |
>NL64_RS23920
ATGGTCGTTAATGCCTTTGTAGAAAAGCGCGCCCGCCAAGCCGGATGGGCGCAATCGCTGTTGTTGCTGCTGGGCAGTTGTTTGCCGGTGCTGGGTGCGG TGCTGCTGGCCCCGGTGTTGCCGCGGATGCAGGCGCATTTCGCCGAGGTGCCCGGCAGCGCCGTGCTGGTGCCTGTGGTGTTGACGTTGCCGGCGCTGGT GATTGCCTTGCTGGCGCCATTCGCCGGGCTGATCGCCGATCGTTTGGGGCGCAAGCCATTACTGCTGGTGAGCATGTCGCTTTACGTCCTCTGCGGCGTG CTGCCGCTCTGGCTCGATTCGCTGCCGGCCATCGTGTTGAGTCGTGCGGGCATCGGCTTGGCCGAGGCGGGGATCATGACCTGCTGCACCACGCTGATGG GCGACTACTACAGCGGTGCCAGGCGCGAGCGTCTGTTTGCCTTGCAGATGGTCGCCACGTCGTTGTCGGCGGCGGTGTTTATCGCGCTGGGTGGTTTCCT GGGTCAGAACGACTGGCGCACGCCGTTCGCGCTGTACGCCGTGGGCCTGATTTTCCTGCCGCTGATGGCCTGGAAACTGTGGGAGCCGCAGGCTCGCCCG CAACCCGAGCAACCCACGCAGCCGCTGCCTGCAGGCAAGTTTCCGTGGCGCGCGCTTGCGCCCCTGTATGTGCTGTCGCTGTTGGCGGGGTTGAGCCTGT TTATCGTGCCGGTGCAGGCCGGGTACCTGCTCAACCTGCTGCACGTGGATGCCCCGCAACAAATCGGCATGACCATGGGCGCCAATCAATTGGGCGTGCT TGTCGGTGCGTTGAGTTTTCGTTTGTTCAGCGGCATGCGTGGCCAGCACATGCTGCTGATCGCCTATGTGCTGGCGGGCATCGGTGGGTTGTTGATGGCT GATGCGTTGACCCATGTGCAAGTGGTGGTCGCCGTGACGATCAACGGCCTGGGCATCGGCCTGATGCTGCCGACGCTGATCACCTGGATCATGGCGCAAG TCAATTTCCATCAACGCGGGCGGGCGGCGGGGTGTTTCACCGCGGCTATCTTTGCCGGCGAATTTATCAGCCCCCTGGTGGTGCTCGGCATGACCCGTGG CGACGCCATGGCGCTACCCCATGCATTGGCCGTTGTCGGTGGACTGCAACTGTTGGTGGCGCTGTTTTGTCTGGCCGTGCCCCGGCTCGGTGGCCTGTCC CACCACGCGAATGTTGTTGTCGGTGGCACGACCATCGGCGACGAAAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
ATGAGGATTTTCCATGCAAGCGCTTCCTGAATTCAAACGAGTGGTCACCGGCCACGATCAGCAGGGTCAGGCCATCGTCGCCAGCAACGGGCCGACGCCA AACGTGTTCCCGCTGTCGGCAGTGCCGGGCACAGTGTTTTACGAACTGTGGAACAGCAGCACCAGCCCGGCCTTGCTCGATAACGCCAGCGATCCCAGCA GCAAACCCTTGCAACTGAGCCCCGGGCCACAGGGCAGCGTGATCCGGGTGGTGGATATTCCGCCGGACAGCGTGCAGAACCAGGTCAGCGATGAGAACGC CGCAGCGGTGTTCGCTGAAATCGGCGAGTCCCACGCCGGTACAGGGCAGGCCAGCTCGAAGCATAAATTGATGCACCGAACCGAAACCCTCGACTACGGC GTCGTCACCGAAGGTGAAGTGTGGCTGGTACTGGACGAGGACGAAGTGCACCTCAAGCGCGGCGATGTGGTGGTACAACGCGGCACCAACCACGCATGGA
|
|
| Amino Acid Sequence |
>MFS transporter
MVVNAFVEKRARQAGWAQSLLLLLGSCLPVLGAVLLAPVLPRMQAHFAEVPGSAVLVPVVLTLPALVIALLAPFAGLIADRLGRKPLLLVSMSLYVLCGV LPLWLDSLPAIVLSRAGIGLAEAGIMTCCTTLMGDYYSGARRERLFALQMVATSLSAAVFIALGGFLGQNDWRTPFALYAVGLIFLPLMAWKLWEPQARP QPEQPTQPLPAGKFPWRALAPLYVLSLLAGLSLFIVPVQAGYLLNLLHVDAPQQIGMTMGANQLGVLVGALSFRLFSGMRGQHMLLIAYVLAGIGGLLMA DALTHVQVVVAVTINGLGIGLMLPTLITWIMAQVNFHQRGRAAGCFTAAIFAGEFISPLVVLGMTRGDAMALPHALAVVGGLQLLVALFCLAVPRLGGLS HHANVVVGGTTIGDEN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|