Pseudomonas fluorescens C2, NL64_RS03180
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATAGTTCATCCGCGCAGCTTAGCATTGCCGCCAACGTATCGTTATAACCCGATATACCGATTTGCTCAGTCATCAGAGCAAAATCATATTTGTATATCGC GAAATAACGATTTAAATTTCGCTTCATCGCGATATAGCGTTTTACTGATCACGAGCCCCCAATCATGAACCTTGAACTCGACGAAATAATAAAAGCCCTG GCACACCCGGTACGGCGAGAAATCCTGCACTGGCTCAAAAACCCGGACGTCGAATTTCCAGACCAGTCCCACAGCAACGAGCACGGCGTTTGTGCCGGGC AAATCGATCAACGTTGCGGTCTGTCGCAGTCCACGGTGTCCGCGCACCTGGCCACCCTGCAACGCGCCGGCCTGATCAGCAGCCGCAAAGTCGGCCAGTG GCACTTTTTCAAACGCAATGAGGAAACCATCCAGGAGTTCCTCAAAATCTTCAGTAAAGAGCTCTGACCCTTCACGTCAGCCAGCCAAAAGGAATTACCA
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| DNA Sequence for Gene |
>NL64_RS03180
ATGCCCCTCTCGCTACTCATATTGGCCTTGAGCGCCTTCGCCATCGGCACCACCGAATTCGTCATCATGGGCTTGCTGCCCGATGTGGCGGCCGACCTCG GTGTGTCGATCCCCGGCGCTGGCTGGCTGGTGACCGGTTACGCCTTGGGCGTGGCCATCGGCGCGCCATTCATGGCACTGGCCACCGCCAGACTGCCGCG CAAGGCTGCGCTGATCGCGTTGATGGGCATTTTCATTATCGGCAACCTGCTCTGCGCCGTGGCCAGCGACTACAACGTGTTGATGTTTGCCCGCGTGGTC ACAGCCCTGTGTCACGGCGCGTTCTTCGGTATCGGTTCAGTCGTAGCCGCCGGCCTGGTGCCGGCCAACAAACGCGCTTCGGCCGTGGCCCTGATGTTCA CCGGCCTGACCCTGGCCAACGTCCTCGGCGTGCCACTGGGCACCGCACTTGGTCAACAAGCCGGCTGGCGCTCGACCTTCTGGGCGGTGACCGTGATCGG TGTGATCGCGCTGTTCGGCCTGATCCGCTTCCTGCCAGCCAAGCGTGATGAAGAGAAACTCGACATGCGCGCCGAACTGCGTGCCCTCAAAGGCGCCGGT ATCTGGTTGTCCCTGAGCATGACCGCGCTGTTCGCCGCGTCGGTGTTCACCCTCTTTACCTACGTCGCGCCACTGCTGGGCGAAGTGACTGGCATCTCGC CCCGTGGCGTGACCTGGACCCTGATGCTCATCGGCCTGGGCCTGACCGTCGGCAACATCATCGGCGGCAAACTGGCTGACAAAGGCCTGGCCGCCACACT GATCGGCGTCTTCATCGCCATGGCGGTGGTCTCCACCGTGCTGACCTGGACCAGCGTCGCGCTGATCCCGACCGAAATCACCCTGTTCCTCTGGGCCACC GCGTGTTTCGCCGCCGTGCCTGCCCTGCAAGTCAACGTGGTGACCTACGGCAAGGCTGCACCGAACCTGGTCTCGACCCTGAACATCGGCGCGTTCAACG TCGGCAACGCACTCGGCGCTTGGGTCGGTGGCAGCGTGATTGCCCACGGCTTCGGCCTGACCAGCGTGCCCCTCGCGGCTGCCGCACTGGCCGTACTCGC CCTGGTGGTGACCCTGATTACTTTCCGTCAGAACGGCAATCCCGAACTGGCTCCTGCTACTAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TCTTCAAAAGAGAGCAATTAAATGACGACTATTTTCGATCCGATCAAACTGGGCGACCTGGAACTGTCCAACCGCATCATCATGGCGCCGCTGACCCGCT GCCGCGCTGACGAAGGCCGTGTGCCGAACGCGCTGATGGCCGAATACTACGTACAGCGCGCCTCCGCCGGCCTGATCCTCAGCGAAGCCACTTCGGTCAC GCCGATGGGCGTGGGCTACCCGGACACCCCGGGTATCTGGTCCAACGATCAGGTGCGTGGCTGGTCCAACGTGACCAAGGCGATCCACGGCGCGGGTGGC AAGATCTTCCTGCAACTGTGGCACGTCGGCCGGGTTTCGCACTCGTTGTACTTGAATGGTGAAGCTCCGGTCGCACCGAGCGCCATCCAGCCGAAAGGTC ACGTCAGCCTGGTTCGCCCGTTGTCTGACTACCCGACCCCGCGCGCCCTGGAAACCGCTGAAATCGCCGACATCGTCGACGCTTACCGCACCGGTGCCGA
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| Amino Acid Sequence |
>arabinose transporter permease
MPLSLLILALSAFAIGTTEFVIMGLLPDVAADLGVSIPGAGWLVTGYALGVAIGAPFMALATARLPRKAALIALMGIFIIGNLLCAVASDYNVLMFARVV TALCHGAFFGIGSVVAAGLVPANKRASAVALMFTGLTLANVLGVPLGTALGQQAGWRSTFWAVTVIGVIALFGLIRFLPAKRDEEKLDMRAELRALKGAG IWLSLSMTALFAASVFTLFTYVAPLLGEVTGISPRGVTWTLMLIGLGLTVGNIIGGKLADKGLAATLIGVFIAMAVVSTVLTWTSVALIPTEITLFLWAT ACFAAVPALQVNVVTYGKAAPNLVSTLNIGAFNVGNALGAWVGGSVIAHGFGLTSVPLAAAALAVLALVVTLITFRQNGNPELAPATN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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