Pseudomonas fluorescens C2, NL64_RS22845 (ligD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTTGAAGGCCAAACCGTCAATCAATGGCTGTCATCCCCGGAGCAACTGCCCGGATTCCTCGCGGCCATGGAAAACAAGGGCTGGATCAAGCGCCAGCAAA ACCCGCAAGACAGCCGTTTCTGGCAGTTGATCGATGGCGACGGCGCGGCGATGTTCGGCGTGTTCAGCCCTTATGAAAAGCAGCTGTTGCATGACTGGAT CGCCGGAGACTGGAAGCCCGAACGTTCAGCACCCTCGGTGCGACGCGGCGCCAGTGTGACGGTCGAGCCGGCAGTGCCGGACAACGACCCGGACGTCCAG GCGCTAAAGGCTGCGCTGAAGGGACTTGCCGCGCACGAGCAGATATCGGTGTTGATCCCTTGGCTCAGCGCCCATCGCCATGCACACCCCGCCGGGTTGA TGGCGACGCGGCGGTTTATCGAGCTCAGATCCAGTATTGGCTAGGAAGCACAACAGCAATCAGGAAGAGCAGCCACGCGCTGCCGACCAGCAGGTGAGCC
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| DNA Sequence for Gene |
>NL64_RS22845
|ligD
ATGAGCAAGAATCTGGATGATTACAACCGCATGCGCGATTTTTCCGCGACCTCGGAACCGGCCGCCGTCAAACGTTCGGGCAGGAAAAACGCCAAGGATC ACGCCTTGCAGTTCTGCATCCAGAAGCACGACGCCTCACGCCTGCATTACGATTTTCGCCTGGAACTCGATGGCGCACTAAAGAGCTGGGCGGTGCCCAA AGGCCCGTCGCTCGACCCCAAGGTCAAGCGTCTGGCGGTGCATGTCGAAGACCATCCGATTGACTACGCCACCTTTGAAGGCAGCATTCCGCAAGGGCAT TACGGCGCGGGCGACGTGATTGTCTGGGATCGTGGCGTGTGGATCCCCCAGGAAGATCCGGCCAAAGCTTATGAAAAGGGTCGGCTCAAGTTCGAGCTGC AAGGCGAGAAGCTCGCAGGCCTTTGGAACCTGGTGCGCACGCACATGCCGGGCAAGCAGGAGCAATGGTTTCTGATCAAGCATCAGGACGGCGCGGCCCG GCCGGAAACCGATTACGACGTGGTAGCCGCCGAGCCCGATAGCGTGCTCAGCGAGCGAACCATCGTCGCCAAGGCGCCCAAAGCCGCCAAAGCCGCGAAA CCCAAAGCCGTCAAGAAACCCGCCACCCCGGCGCGCAAGGCACAGTCCGCGCAATTGACCGGCGCCCACAAAGCCAAACTGCCGGATCAGATCAAGCCGG AACTGGCGACACTGGTGGAAAAAGCCCCGGATGGCCGGTGGAGTTACGAGGTCAAGTTCGACGGCTACCGGATCATGGCGCGCATCGACCATGACGCGGT CAAGCTCTTCACCCGCAACGGTCACGACTGGACTCACAAATTGCCCGCTCAGGCCAAGGCGCTGGCGAGCCTGGGTGTCGAGTCGGCCTGGCTGGACGGT GAAATGGTGGTCGCCGACGAGCACGGCGTACCGGATTTTCAAGCCCTGCAAAACGCCTTCGAGGCCAATCGTAGCGGCAACATTCTCTATTACCTGTTTG ATTTGCCGTACCTCAATGGCGTCGACCTGCGCGAGGTGCCCGTCGAGGAACGCCGGGCGGCGCTGGCGACGCTGCTGAAAGCCAATAATGAAGATCTGCT GTTGCGGTTTTCTGACGCTTTCAACGAGGACCCGGAAGCTCTCCTCAACAGCGCCTGCCAAATGCGCATGGAGGGGCTGATCGGCAAGCGCCTGGGTTCG GCTTATGTGTCCCGGCGCAGCAGTGACTGGATCAAACTCAAGTGCAAACACCGGCAAGAATTCGTCATCGTTGGCTACACCGATCCCAAGGGTTCGCGCA ACGCCTTTGGCGCGTTGCTCTTGGGTCTGCATGACCGCGACAGCGGCGAGTTGCGTTACTCAGGCAAGGTCGGCACCGGGTTTACCGAGGCGACCCTCAA CAGCATTCACGACCAACTCAAGCCGTTGGTGACGAAGAAACCTGCCGTGGTCAATCCACCCAGCGGTGCCGAATTCAAGGCTGTGCATTGGCTCAAACCA AAGCTGTTGGCGGAAGTGGCTTTTGCCGAAATGACCAAGGACGGTTCGGTACGGCACGCGGTGTTCCATGGCCTGCGTGACGACAAGCCTGCCAAAGACA TTACCGAGGAGCGTCCGACTGCCGTGAAAACTGCCTCCGCGAAAACTGCCCCCGCGAAAAAAGCCGCTGCCACCAAAGCGCCTGCCGCGAAGAAGAAGGC CGAACCTGCACCGTCGCAAATTGGCCTCGACCAGGGCAAGGTACGCATTACCCACCCGGACCGGATCATCGACGCCAGCAGCGGCGCGACCAAAGTGCAA CTGGCGGAGTATTACGCCAGCGTCGCCGAGTGGATTCTGCCGCAGCTCAAGGACCGCCCCGTAGCGCTGGTGCGTGCGCCGGATGGCATTGCCGGTGAAC TGTTTTTCCAGAAGAACGCCGAACGCCTGGCGATCCCCGGCATCACCACCCTAGACCAGAAACTCACCGGCCAGCCGATGATGGTCATCAACAACGCCGA AGCCTTGATCGGCGCGGTGCAGATGAGCACCGTCGAGTTGCACACCTGGAATGCCACCTCGGACAACCTCGACAAGCCCGACCGCTTTGTCCTCGACCTC GACCCGGACCCGGCGCTGCCGTGGAAGCGCATGGTCGAGGCGACTCAGTTAACGCTCTCGGTGCTTGATGAACTTGGGCTCAAGGCATTCCTCAAGACCA GCGGCGGCAAGGGCATTCACCTGGTGGTGCCGCTGACCCGCAAGCTCGGTTGGGATGAGGTGAAGGATTTCAGCCACGCCATTGTCAGCCACATGGCGAA GCTGCTGCCGGAGCGCTTTTCAGCAGTGTCGGGACCGAAGAACCGGGTAGGGCGGATCTTCATCGATTACCTGCGCAACGGGCTGGGGGCGACCACCATT TGCGCCTACGCCGCGCGTACCCGCGAAGGGCTGCCGGTGTCGATGCCGATTTTTCGGGAAGAAGTGGAGGAGCTCAAGGGCGGCAATCAGTGGAACATTC ATAACGCGCATGAACGTCTGGTTGAAGTGGGTGATGAACCGTGGGCAGACATGAAGAAAACCCGTCAGACAATCACAGCCGAGATGCGCCGGCGGGTCGG GATGAAAAAAAACTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGATTCCCGTGATGAAACCTATTGTGGCGAGGGAGCTTGCTCCCGCTCGACTGCGAAGCAGTCGCTAAAACGGTGATTGCCAACCGAATTTTGGGGCTGC TGCGCAGCCCAGCGCGAGCAAGCTCGCTCGCCACAATGGCGTGTTGTTAGCCGACGATGTTATTTGTTGTTGATGAACGCCTGGAAGTCGCTACCCATTT TGTCGATTGCTGTCTTGAAGTCCTGGGCGGTGATTTTCTGTTTGTCATTTTCCAGCGTGGTGCCAAAGACCTTGCGCACGACCCTGCCTACGGACTGATT GTTTTTCGCGTCGATGAACTCGGCTTCGATAAACAGTTCGGTGTTTTCATCCCGGATACCGGTAACGGCGGACACACCACCCACGACCGCTGCGATAGGC ACCACTTCATACCAGTGCATGCCTTCAGGCGAGGCACTTACCCCGGTGATGGCTGCACGCATGACCAGGAGTTTTGCGCCGGCCGGCGCGGCGTTCGAGC
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| Amino Acid Sequence |
>ATP-dependent DNA ligase
MSKNLDDYNRMRDFSATSEPAAVKRSGRKNAKDHALQFCIQKHDASRLHYDFRLELDGALKSWAVPKGPSLDPKVKRLAVHVEDHPIDYATFEGSIPQGH YGAGDVIVWDRGVWIPQEDPAKAYEKGRLKFELQGEKLAGLWNLVRTHMPGKQEQWFLIKHQDGAARPETDYDVVAAEPDSVLSERTIVAKAPKAAKAAK PKAVKKPATPARKAQSAQLTGAHKAKLPDQIKPELATLVEKAPDGRWSYEVKFDGYRIMARIDHDAVKLFTRNGHDWTHKLPAQAKALASLGVESAWLDG EMVVADEHGVPDFQALQNAFEANRSGNILYYLFDLPYLNGVDLREVPVEERRAALATLLKANNEDLLLRFSDAFNEDPEALLNSACQMRMEGLIGKRLGS AYVSRRSSDWIKLKCKHRQEFVIVGYTDPKGSRNAFGALLLGLHDRDSGELRYSGKVGTGFTEATLNSIHDQLKPLVTKKPAVVNPPSGAEFKAVHWLKP KLLAEVAFAEMTKDGSVRHAVFHGLRDDKPAKDITEERPTAVKTASAKTAPAKKAAATKAPAAKKKAEPAPSQIGLDQGKVRITHPDRIIDASSGATKVQ LAEYYASVAEWILPQLKDRPVALVRAPDGIAGELFFQKNAERLAIPGITTLDQKLTGQPMMVINNAEALIGAVQMSTVELHTWNATSDNLDKPDRFVLDL DPDPALPWKRMVEATQLTLSVLDELGLKAFLKTSGGKGIHLVVPLTRKLGWDEVKDFSHAIVSHMAKLLPERFSAVSGPKNRVGRIFIDYLRNGLGATTI CAYAARTREGLPVSMPIFREEVEELKGGNQWNIHNAHERLVEVGDEPWADMKKTRQTITAEMRRRVGMKKN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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