Pseudomonas fluorescens C2, NL64_RS22050
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_28, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTAGGCACCATTGGCAAAAATGCTCAAGGTACGCTCGTCATCACGCAGGTTGGCGGGTGCTGCTCCGGGGCACGCAGGAACGGCGTCGACCGAAGATTC CTCGAGGTCGATAGCCTGAACATTGCCGGATGTTGAGACTTAAGACGAGCGCTCTATCTTAAAGTCACCAGAACATGGAGAAAGATATGAGAGGCATCGC GCAAAATCCGAACAAAAGTGTAGACGAATCCATCTAGGCGGACTTAGCCAAGGCTGGAAAAAAGAGCTTCTAGCGTGGGGAACTTTTCCTTGGCGGCTCG CTCAGATCGGGCCTTGTAGCTGGATATTTTTTAAACAACGCAGTTAAAAGTTGCTCGAAAAAGAATCAACGCCTACAATTTTTTTTGCTTCTTGCTTTAC GTCAGTTTACTTACGACAAGTAATGGGTAGTATGTACGCCGGCTAATTCCTCACTCTGAGGAGATAGCTAATTAATGGAAAGTCCTTGAAGGGGAACACG
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| DNA Sequence for Gene |
>NL64_RS22050
ATGAACAACGTTCTGAAATTCTCTGCTCTGGCTCTGGCCGCAGTTCTGGCTACCGGTTGCAGCAGCGCATCGAAAGAAACCGAAGCACGTCTGACCGCTA CTGAAGACGCAGCTGCTCGCTCCCAGGCTCGTGCAGACGAAGCTTACCGTAAAGCTGATGAAGCTCTGGCTGCTGCTCAAAAAGCACAACAGACTGCTGA CGAAGCTAACGAGCGTGCTCTGCGCATGCTGGACAAAGCTAGCCGCAAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAATCCTTCGGGATTGTTATCAAGCCGACCCATTTTTTGGGTCGGCTTTTTTATTGCCTGGGGTTTTGTCCTGGCCATAAAAAACCCGCCGAAGCGGTCA GCTTCGGCGGGTTCTTTTCAAGCATTACTGCAGCGGATCGATCGGTGCGCTCGTGACCATCGACGTCGAAGTATTCGGCACGGCGATTTCCACCGGCAAA CCATCTTCGGCAGCGACAACGTCACGCACCACATCCCAGTTCATGCGCAGGTTGTTAGTGATGTCTTCACGCTTGAGCATCGCATTGATCACGGCGGTGT GCTTGTCGACCACCGACGGGTTGCCGTTATCGTCCAGCGGCGTATGCGCCTCCAGATAGACCTTGCCGCCACTCACGCCGAACTTGTACGGGTCGTTGAT GATCCGCACCGACGTACCGACCGGCACCATGCTCGCCATTTCCAGCACGTTGTTGTTGAACATCCGGAAGCAGCCGTGGCTGGTACGCATGCCGATGCCG
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| Amino Acid Sequence |
>outer membrane lipoprotein OprI
MNNVLKFSALALAAVLATGCSSASKETEARLTATEDAAARSQARADEAYRKADEALAAAQKAQQTADEANERALRMLDKASRK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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