Pseudomonas fluorescens C2, NL64_RS19820
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_22, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGAAAAGGCTGAGGAAGCCAAACAGGCTGAAAGCTGACCAGCGCATGGGCTGAATCTCCTGAGATCGAGTCATAGATGGACGAAGCTTGGCCGAGCGC GACGCCGATTGCCAGCCCGGCAGATCTCTTCAGAACTTGACCTTGCCATGGTGGCAAGCTCGACACTGCACGCAGCCTTATCAAACAGCCTCATTAAAGG AGTCATTCCATGCAAGTGTTCAATGTTGAAGGCATGTCCTGCGGTCACTGCGTCAAGGCCATCACGCAAGCCGTTCAGGCCAAAGATTCGGCCGCCAGCG TGCGCGTCGACCTGGCCTCGAAAGAAGTCGGCGTCGAGACTGCGTTGACCGCTGATCAAGTGATCGCGGCAATCAGCGAAGAAGGCTATGGCGTCAAATT GGCCTGATCTTTTTAATAGTTAGCGAGCTATCTTAATGTTCAAGGCGTCCGGGCGCGGCTAGACTGTCGGGCTGCTGACTTCTGTCCCACTGGATGCCTG
|
|
| DNA Sequence for Gene |
>NL64_RS19820
ATGAACTTCCGCACAATCCTGATTCTTGGCGCCTTGAGCGCGTTCGGTCCGCTGGCGATCGACTTCTATTTACCGGCGTTCCCGGCGATGGCGCTGGCCT TTGGTACCGATGAACAACACGTTCAGCTGACACTCGCGGCGTATTTTCTCGGCTTGTCCATCGGACAACTGGCCTACGGCCCGGTGGCGGACCGTTTTGG TCGACGCATACCCTTGTTGATCGGTGTCGGGTTATTCACCGCTGCCTCGTTGTTGTGCGCCTACGCGCCGAACCTCGACTGGCTGATCGGTGCACGTTTC ATCCAGGCGCTGGGCGGTTGCGCAGGGATGGTGATCTCGCGGGCGGTGGTCAGCGACAAATGCGATGCGGTGGGTTCGGCGAAAGTCTTTTCACAGTTGA TGCTGGTCATGGGGCTGGCGCCGATTCTTGCGCCGATGCTCGGCGGCTTGCTGGTGAACACCACCGGTTGGCAGTCGATCTTCCTGGCGCTGACCGGTTT CAGTGCCTTGGCAGGTCTGGCCGTGGCGCTCGGCTTGCCGGAAAGCATGCCGGCCCATTTGCCACGCCAACCCTTGTCCGGTGCGCTGCATCAGTACGGA CGTCTATTGAAGGATCCGGTGTACCTCGGTCACGCGCTGACCGGCGGTATCGCCATCGCCGGGATGTTTTCCTACATTGCCGGGTCGCCATTCGTCATCA TCAAACTTTATGGCATCCCGGCCGAGCATTTTGGCTGGTTCTTCGGCGTCAATGCGGCGGGGTTCATTCTGGTGGCCCAGGTCAACGCGCGACTGTTGGC CAAGCGTGGTCCGGCCTTCCTGCTGACGCGCACGGTGTGGATTTACCTGGGCGCCGGCCTGGCCTTGCTCGCCGTCAGTGCGTTGCGCACCGAACAACTG TGGCCGTTGTTGATCCCGTTGTTTGTCTGCATCGCCAGCCTGGGTTGCATCCTTCCCAACGCTTCGGCCTGCGCGATGAACGGTCAGGGCGCGCGGGCCG GCAGTGCGTCGGCGATGCTCGGTTGCCTGCAATTCAGTGTCGCTGCCGGTGCCGCCGCGCTGGTGGGGATTTTGCACGACGGCAGCGCCATGCCGATGGC CATGGTCATCAGCCTGTGTGGAATTCTGGTGGTGTGCGCCGCGATGCTCACCCGGCGTTTGCAAAATGCCCGGGCACTGGCGCAAGCCCAGGTCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGACGGACTCAGCCAGCGGCACGCTGCTGGCGGTCGGGAAACTGATGGGGCGCGTGCAATCGCGCTTCGAGGGTATTGGTGAAGGCGCGCGCTTCCGCTT CGCTGCGAAAGGTAACGGCGTGTTGGTCCAGACGGACCTGCCACTGGGATTTTGCCAATTCTTTTATCAGGATCTTCATTGCCGCCGACCTCCTCAAGTA AAAGATTGTCCCGCAGAGGTTTCGATTGTAGACCCGAATTGGATGGCAATTATGACAAGGGTCAACCTTCGGACTGACGGTTTACCGGTCATGGGATTGC GCCTTCTGTAGGAGCTGCCGAAGGCTGCGATCTTTTGATCTTAAAAAATCAAAATCAAAAGATCGCAGCCTGCGGCAGCTCCTACAGCTGCGTGCGATCT TTAAATCCTAGAAACCTTCCAGCACGATCTTGCCCTTGGATTTTCCGCTTTCCAGCAGTGCATGGGCGCGACGCAGGTTGGCCGCGTTGATGGTGCCAAA
|
|
| Amino Acid Sequence |
>major facilitator transporter
MNFRTILILGALSAFGPLAIDFYLPAFPAMALAFGTDEQHVQLTLAAYFLGLSIGQLAYGPVADRFGRRIPLLIGVGLFTAASLLCAYAPNLDWLIGARF IQALGGCAGMVISRAVVSDKCDAVGSAKVFSQLMLVMGLAPILAPMLGGLLVNTTGWQSIFLALTGFSALAGLAVALGLPESMPAHLPRQPLSGALHQYG RLLKDPVYLGHALTGGIAIAGMFSYIAGSPFVIIKLYGIPAEHFGWFFGVNAAGFILVAQVNARLLAKRGPAFLLTRTVWIYLGAGLALLAVSALRTEQL WPLLIPLFVCIASLGCILPNASACAMNGQGARAGSASAMLGCLQFSVAAGAAALVGILHDGSAMPMAMVISLCGILVVCAAMLTRRLQNARALAQAQV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|