Pseudomonas fluorescens C2, NL64_RS18485
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_21, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATCAAGTCTGTTTCTCGGTGCCCAACATCCTTATCTTTGCCCGCACCAAACAGCACTTGCCAAGCAAGAAGGTTTTAAAGATGTCCAACAGTATGGGTAT TGCCAGCGCTTTCGTTTTGTCCTCTTTGTTCGTGTCTTCGTTCGCCATGGCTGAAGAGTCGCAAGCCTTCGTCGCACAAAACAACGCACGCGCCGCGGCG TATGAAGAACACCAGATCGAGATGACGGCCAAAGCTCAGGAAGCCACCCAAGCCCCGCAAGCATCGAGCATTCAGGCCCAACCCCAGGCCTCGAAAGACA GCTGAGTCCTGCGCATCGCACCACTTTCCCTCGACGCTTTTCATCGGCTCTTCCCTTTGAAAAGTTGTCTTCAAAGCCGCTGCTATCAGCGGCTTTTTTT CGTTGTGGTTTTAAAACCGCACGCGTCGCCCTCTTGTTTGTAAACAACCAGAACTTAAAAAACAGTGACGTTATCCGTTGACCAAGGAGCTTTACCGCAC
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| DNA Sequence for Gene |
>NL64_RS18485
GTGCGTTTCCCAATCCGCTTCAACCCGTTGTTCGTTGCAATCGCTGCAACGATGGCTGCCAGTGCCCACGCCGCCGACGATTCGACCGCCTCAGGATTCA TCGAAGGTTCGAGCCTCAATCTCAACGCCCGCAACTACTACATGAACCGCAATCGCTTGCAGCAGGCGGACGACAATATTGAATGGGGCCAGGGTTTTCT TGGCGTCTTCGAATCGGGGTTCTCAGAGGGGATCGTCGGGTTTGGCGTCGATGCCCATGCCATGCTCGGGCTCAAGCTCGACGGCGGTGGCGGGACGGAT AATTCGAGCATCCTGCCGGTCAGCGATGGCAACGGCAAAGCGCCGGGGTCGTTCTCGACCGCAGGCGGCACGCTGAAAATGCGCGCCTTCGATACCGAGT TGAAGGCCGGCGATTTGTTTCTCGCCAACCCGGTGATTGCCGGCGGCGAAACCCGCATGCTGCCCCAGACCTTTCGCGGGGTCAGCCTGACCAACCACAG CTTCGACGGCGTGATGATCGAAAGCGGCCAGGCCAGTTTCACCAAGCCGTATAACCAGAGCGGCCACACGCGTATCGGTACGTCCTACGGCAGCCTGCCC GACGGTGAGGACAGCCAGCACCTGAACTGGGCCGGCGTAGCCTGGAGTGGTTTGCCGGGCCTGACCAGCAGCCTGTATGCCGCTGAGCTCAAGGACATCT GGAACCAGTACTACTACGACCTGGATTACACCTATGCACTGAACGACGTGATCAGCCTCAATCCGGGCGTGCACTTCTATCACACGCAAGACACCGGCGA TGCGCTGCTCGGCCACATCGACAACAACACCTACAGCCTGCATTTCACCGTCGGCGTCGGCAATCACGCCATCACCGCCGCCTACCAGCGGGTCAATGGC AACACGCCGTTCGACTACATCAGCCAGGGCGACAGCATTTTCCTCGACAACTCCCAGCAATATTCGGACTTCAACGGCCCGAACGAACGCTCGTGGAAGC TCAAGTACGCGTATGACTTTAACGGGCTCGGCCTGCCGGGCCTGACTGCGGCACTGTCCTACTCCCGTGGTGAACTGGATTTGACCAAAGTCGATCCCGA AAGCCCCGGCTACGCCGCGTGGTACAGCGCTGACGGCAAAAACGCCAAACACTGGGAACGCGACATTGACCTCAAGTACGTGGTCCAGAGCGGCCAGGCC AAGGACCTTGCGCTGCACCTCCAGTGGGCGACCAACCGTGGCGGCAACGGCTATGGCTCACTGGACCAAGACACCGATGAATACCGGGTGATCGTCGATT ACCCGTTCAACGTATTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGGCAGTCATACCTGTAGGAGCCGGCTTGCTGGCGATAGCGGTGAGTCAGGCGCAGTTGATGCGCCGCTATCGCCAGCAAGCCAGCTCCTACAGATGTC AGCGCTTTTGGAAATTAGCCCGGGCGGGGGACATTTTGATGGGCTGCTACGCTTAACCCGTCATCCAAGCAGACATCAGCCCCATGACCGTACGCCGCAC TCCACATCCTTCAGGCAGCGCCGGACGGCCGGAGATCCTGGTGATCCTCGGCAGTTGCCTGACGGTCATCGCGATTCTCAGCATCGTGACTTTTCTGCTC ATCCGTGAACACGCCAACGCCCAACAGGCCGCCACGCGCAGCGCCACCACTATCGCCGAGTTGATCGACGCTGACGTGCTGCGCACGGTGGAACTCTATG ACCTGACTCTTCAGGGCTTGATCGCCGCTGCGCAACGGGATGATCTCAAGCAGGTTTCAGCGCAAATCCGCCACCTGGTGCTCTTCGACCGCTCCACCAC
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| Amino Acid Sequence |
>porin
MRFPIRFNPLFVAIAATMAASAHAADDSTASGFIEGSSLNLNARNYYMNRNRLQQADDNIEWGQGFLGVFESGFSEGIVGFGVDAHAMLGLKLDGGGGTD NSSILPVSDGNGKAPGSFSTAGGTLKMRAFDTELKAGDLFLANPVIAGGETRMLPQTFRGVSLTNHSFDGVMIESGQASFTKPYNQSGHTRIGTSYGSLP DGEDSQHLNWAGVAWSGLPGLTSSLYAAELKDIWNQYYYDLDYTYALNDVISLNPGVHFYHTQDTGDALLGHIDNNTYSLHFTVGVGNHAITAAYQRVNG NTPFDYISQGDSIFLDNSQQYSDFNGPNERSWKLKYAYDFNGLGLPGLTAALSYSRGELDLTKVDPESPGYAAWYSADGKNAKHWERDIDLKYVVQSGQA KDLALHLQWATNRGGNGYGSLDQDTDEYRVIVDYPFNVF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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