Pseudomonas fluorescens C2, NL64_RS13710
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_15, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCAAACCTATCCTGCAATTTGGCAAGATCAACGTAGGACTGACCAAGATAGAACCGGCCGGTCAGTACGCACTGAAACTGACCTTCGACGACGGCCACG ACAGCGGCCTGTTCACCTGGGAATACCTCTACGAGCTGGGGCGACGTTATGACGCACTCTGGGAGGATTATCTTGCCGAGCTCAAAGCGGCCGGAAAAAC CCGCGACCCGAACGAATCCGTCGTCAAGCTAATGCTCTAGCCTGAGCCTCTTGCTCTTTAGAAGGCATTTTCTAATTTCATCTGTTTGAATGCTTGGCCG CGAGGTCAGTCATTGGCCTGCTTGCGAAAAAAATTAAACTCGGGTAACCAATGGAGCTGGCAAGTTCCCTGCAGTGCCCTCTGCGAACGAAAAAGCAGCG ATGCAGAATTAACGGTCACCCGAGCAGTAGTACCTGGCATTGGCTGTGTGACTGCACAGCAGGACCCCGGTACTCGTCTCAGGACAATGGAGCGTCGTAG
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| DNA Sequence for Gene |
>NL64_RS13710
ATGAGTAACAAGAATAACGATGACTTGAAGTATCAGGCCTCGGAAAACACCTTGGGACTGAATCCTGTCGTTGGGCTGCGTGGAAAGGATCTACTGGCTT CTGCTCGCATGGTTCTCAGGCAGGCCATCAAACAACCGGTGCACAGCGCCAAGCATGTCGCGCATTTCGGCCTTGAGCTCAAGAACGTTTTGTTCGGCAA ATCAGCCCTGCAACCGACCAGTGATGATCGACGTTTTGCCGATCCGGCCTGGAGCCAGAACCCGCTCTACAAACGTTATCTGCAAACTTACCTGGCGTGG CGCAAGGAACTCCACGACTGGATCGACCACAGCAACCTCACACCCAATGACGCGGCTCGCGGCCACTTCGTGATCAACCTCATGACCGAAGCCATGGCCC CGACCAACAGCGCGGCCAACCCGGCGGCAGTCAAACGCTTTTTCGAAACCGGCGGCAAGAGCCTGCTCGACGGCCTCTCGCATCTGGCCAAGGACATGGT GCACAACGGCGGCATGCCGAGCCAGGTCAACATGGGCGCCTTCGAAGTCGGCAAGAGCCTGGGCGTGACCGAAGGCGCGGTGGTGTTCCGCAACGATGTG CTGGAGCTGATCCAGTACAAGCCCATCACCGAGCAGGTCCACGAGCGTCCACTGCTGGTGGTACCGCCGCAGATCAACAAGTTCTATGTTTTCGACCTCA GCCCGGACAAGAGCCTGGCACGGTTCTGCCTGCGCAATAACGTGCAGACCTTCATCGTCAGCTGGCGCAACCCGACCAAGGAGCAGCGCGAGTGGGGCCT GTCGACTTACATCGAGGCGCTCAAGGAAGCGGTCGACGTGGTCACTGCGATCACCGGCAGCAAAGACGTGAACATGCTCGGCGCCTGCTCAGGCGGCATC ACTTGCACCGCCCTGCTGGGCCACTACGCCGCGATCGGCGAGAACAAGGTCAACGCCCTGACCCTGCTGGTGAGCGTGCTCGATACCACCCTGGACAGCG ACGTCGCCCTGTTCGTCAACGAACAAACGCTGGAAGCCGCCAAGCGTCACTCGTACCAGGCTGGCGTGCTGGAAGGTCGCGACATGGCGAAAGTCTTCGC CTGGATGCGTCCCAACGATCTGATCTGGAACTACTGGGTCAACAATTACCTGTTGGGCAACGAGCCACCGGTTTTCGACATCCTGTTCTGGAACAACGAC ACCACACGGTTGCCCGCAGCGTTCCACGGCGACCTGATCGAACTGTTCAAAAACAACCCACTGATTCGCCCGAATGCACTGGAAGTGTGCGGCACCGCCA TCGACCTCAAGCAAGTGACAGCCGACATCTTTTCCCTGGCTGGCACCAACGACCACATCACCCCGTGGAGGTCTTGCTACAAGTCGTCGCAACTGTTCGG CGGCAACGTTGAATTCGTGCTGTCCAGCAGCGGCCATATCCAAAGCATTCTGAACCCGCCGGGCAATCCGAAGTCCCGTTACATGACCAGCACCGAAAAG GCGTCGAATGCCGATGAGTGGCAAGAAAACGCCACCAAGCACACCGACTCCTGGTGGCTGCACTGGCAGGCCTGGCAGGCTCAACGTTCAGGCGAACTGA AAAAGGCCCCGGCGAAACTGGGCAACAAGGCCTACCCGGCAGGCGAGGCGGCGCCAGGCACTTACGTACACGAGCGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ACCCACAGACCTGTAGGAGCCGGCTTGCTGGCGATTGCATCACCACTTGAAACTGGAAAACGGTGTTGCACGCATCGCCAGCAAGCCGGCTCCTACAGGA TGTGTGTCAGGAACCACGATCCACCCACAGGGCCAGAAGCATGCCGCAACCGTTCATATTCCGTACCGTCGACCTGGATGGCCAGACCCTCCGCACGGCA GTACGCCCCGGCAAGCCTCACTTGACGCCCTTGCTGATTTTCAACGGCATCGGCGCCAACCTGGAGCTGGTGTTTCCGTTCGTCGCGGCGCTGGACCCGG ACCTGGAAGTCATCGCTTTCGACGTCCCCGGTGTCGGCGGTTCGTCGACGCCGAGCCGGCCGTATCGCTTTCCCGGCCTGGCCAAACTGACGGCGCGGAT GCTCGATTATCTCGACTACGGGAAGGTCAACGTGATCGGCGTGTCTTGGGGTGGCGCCCTCGCCCAGCAGTTCGCTTTTGACTATCCGGAGCGCTGCAAG
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| Amino Acid Sequence |
>poly(R)-hydroxyalkanoic acid synthase
MSNKNNDDLKYQASENTLGLNPVVGLRGKDLLASARMVLRQAIKQPVHSAKHVAHFGLELKNVLFGKSALQPTSDDRRFADPAWSQNPLYKRYLQTYLAW RKELHDWIDHSNLTPNDAARGHFVINLMTEAMAPTNSAANPAAVKRFFETGGKSLLDGLSHLAKDMVHNGGMPSQVNMGAFEVGKSLGVTEGAVVFRNDV LELIQYKPITEQVHERPLLVVPPQINKFYVFDLSPDKSLARFCLRNNVQTFIVSWRNPTKEQREWGLSTYIEALKEAVDVVTAITGSKDVNMLGACSGGI TCTALLGHYAAIGENKVNALTLLVSVLDTTLDSDVALFVNEQTLEAAKRHSYQAGVLEGRDMAKVFAWMRPNDLIWNYWVNNYLLGNEPPVFDILFWNND TTRLPAAFHGDLIELFKNNPLIRPNALEVCGTAIDLKQVTADIFSLAGTNDHITPWRSCYKSSQLFGGNVEFVLSSSGHIQSILNPPGNPKSRYMTSTEK ASNADEWQENATKHTDSWWLHWQAWQAQRSGELKKAPAKLGNKAYPAGEAAPGTYVHER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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