Pseudomonas fluorescens C2, NL64_RS12050
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_14, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GATGATGCAGGCCGATTTGGCCAAGGTCGGCATCAAGATCGACATCCGCGTGATGGAATGGGGCGAAATGCTCAAACGCGCTAAAAACGGCGAGCACGAT ATGGTTTCCGCCGGATGGGCGGGCGATAACGGCGATCCGGATAACTTCCTGACGCCTATGCTCAGTTGCGAAGCGGCGAAGAACGGCGAAAACTACGCGC GCTGGTGCAATGCCAAGTTCCAGACGCTGATCGACCAGGCCCGCGAGAAGACCGATCCGGCTGAACGTGCAGCGCTCTATGAGCAGGCTCAGGTTATTTT TAATCAGGACCAGCCGTGGATCAGCATGGCACACACTAGAATGTTCACTGCAATGCGCAACAACGTAGAGGGCTATCACATTAGCCCCCTCACCACTAAT AACTTCGCCACCACCCAGGTGAAGTAATAAGAAAACTCCCGGCATTCCTGAACCCAGGCATGCCGGGCACGCCTAACCGGCTGATGAGGTACAACACACG
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| DNA Sequence for Gene |
>NL64_RS12050
ATGTTTAGTTTTATTGCCCGCCGACTGGGGTTACTGATCCCTACGTTCTTCGGCATCACCTTGCTGACTTTCGCGTTGATTCGCATGATCCCAGGCGACC CCGTGGAAGTCATGATGGGAGAACGCAGGGTTGACCCTGAAATGCACGCTCAGGCAATGGAACGCCTAGGTCTGAACAAACCCCTGTATGCCCAGTACCT GGATTACATCGGCAAACTGGCCCACGGCGATCTCGGGGAATCCCTGCGTACCCGTGAAAGCGTCTGGAGCGAGTTCACCTCCCTCTTCCCCGCGACCCTG GAACTGTCCATGGCCGCGCTGTTGTTCGCCGGCATCCTGGGCCTTCTGGCCGGGGTGATCGCGGCACTCAAGCGAGGATCCCTGTTCGACCACGGGGTGA TGGGCATCTCCCTCGCGGGGTACTCGATGCCGATCTTCTGGTGGGGCCTGATTCTGATCATGTTCTTCTCGGTATCCCTGGGCTGGACCCCGGTATCCGG GCGGATCGACCTGCTCTATGACATCGAGCCACGCACCGGTTTCATGCTGATCGATACGCTGCTGGCCGATGATGTCGGAGCGTTCGTCGATGCCCTGCAT CACTTGATCCTGCCGGCCATCGTACTCGGCACCATCCCGCTGGCGGTGATCGCGCGGATGACCCGTTCGTCGATGCTCGAAGTGCTGCGTGAGGACTATA TCCGTACCGCCCGCGCCAAAGGCCTTTCGCCGTCGCGCGTGGTGTTCGTGCATGGTCTGCGTAACGCGCTGATTCCGGTCCTGACCGTAGTCGGTCTGCA AGTCGGCACCCTGCTGGCCGGTGCGGTCCTGACCGAAACCATCTTCTCGTGGCCGGGCATCGGCAAATGGCTGATCGAAGCCATTGGCGCCCGGGACTAT CCGGTTGTGCAAAACGGCATCCTGTTAATCGCCTGCCTGGTGATTCTGGTCAACTTCGTAGTGGACATCCTCTACGGCTTTGCCAACCCACGCATCCGTC ATCAGCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGTCATTACCCATGAGCACTCCAACATCCTCAGTAGCCACCGCCGCGTCCGCCGTGGATCAAAGCCTGCTGTACCCGTCGCCGTACAAAGAATTCTGGCA AGCGTTCTCCAAGAACAAGGGCGCCGTTGCCGGCCTGTTGTTCATGCTGCTGGTGATTTTCTGCGCCATCTTCGCCCCGTGGGTCGCACCCCATGACCCG AGCGAGCAATACCGTGATTTCCTGCTGACCCCGCCAGCCTGGCTGGAAGGTGGGCAGATACAATTCCTGCTCGGTACCGATGAACTGGGTCGTGACTTGC TGTCGCGCCTGATCCAGGGCTCGCGCCTGTCGTTGCTGATCGGCCTGTCGTCGGTGGTGATGTCGCTGATCCCGGGGATCCTGCTGGGTCTGTTCGCCGG GTTCTTCCCGCGCGTGCTCGGCCCGACCATCATGCGCCTGATGGACATCATGCTGGCCTTGCCGTCCCTGCTGCTGGCCGTGGCGATTGTCGCCATCCTC
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| Amino Acid Sequence |
>peptide ABC transporter permease
MFSFIARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYAQYLDYIGKLAHGDLGESLRTRESVWSEFTSLFPATL ELSMAALLFAGILGLLAGVIAALKRGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYDIEPRTGFMLIDTLLADDVGAFVDALH HLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTARAKGLSPSRVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDY PVVQNGILLIACLVILVNFVVDILYGFANPRIRHQR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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