Pseudomonas fluorescens C2, NL64_RS00050
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas fluorescens strain C2 contig_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGAAGCGATTTCCGTGGGTGTGGTCGATGTCGAAACCCAGCACAAGGCGCTGTCCTTGCGCGTGCTGACGGTCGATGACTCGTCGGTGGCGCGCAAGCAG GTCACGCGTTGCCTGCAAACGGTCGGTGTCGAAGTGGTGGCGTTGAACGACGGCCGGCAAGCGCTGGATTACCTGCGCAAACTGGTCGACGAGGGGAAGA AGCCGGAAGAAGAGTTCCTGATGATGATCTCCGACATCGAGATGCCGGAGATGGACGGATACACGCTGACGGCCGAGATCCGCAACGACCCTCGCATGCA AAAGCTTCATATCATCCTGCATACTTCGTTGTCGGGTGTGTTCAATCAGGCGATGGTCAAGAAGGTCGGTGCCGATGACTTCCTTGCCAAATTCCGACCT GATGACCTGGCATCCCGGGTAGTCGACCGGATTAAAGCAGCAGACATCAACTAGGGGCGTTCGGTCCCTGGCAGTCAACACGATTTTAGAGGCGGCAGCA
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| DNA Sequence for Gene |
>NL64_RS00050
TTGTCTACGGGTAATTTGGATTTCGAACAGTTCCGGGTATTCCTGGAAAAAGCCTGTGGCATTTTGCTCGGTGAAAACAAGCAGTATCTGGTCTCGAGCC GTCTCAACAAGCTGATGGAACAGCAAGGCATCAAGTCGTTGGGTGAGCTTGTCCAGCGCATGCAAACCCAGCCGCGCAGCGGTTTGCGTGAGCAGGTAGT GGATGCCATGACCACCAACGAAACCCTGTGGTTTCGTGACACCTATCCATTTGAAGTCCTGAAGAACAAAGTGCTGCCCGAGGCGATCAAGGCCAGTCCC GGCCAGCGCTTGCGGATTTGGTCGGCGGCCTGTTCGTCGGGTCAGGAGCCGTACTCGCTGTCGATGTCCATCGACGAGTTCGAGCGGGTCAACATGGGCC AGTTGAGGATGGGCGTGCAGATCGTTGCCACTGATCTGTCCGGTACCATGCTGAACAACTGCAAGACCGGCGAGTACGACAGCCTGGCCATCGGTCGTGG TCTGTCGCCGGAGCGGTTGCAGCGTTACTTTGATCCGAAAGGGCCGGGTCGCTGGGCTATCAAGGCGCCGATCAAGAGTCGAGTGGAGTTTCGTTCGTTC AACCTGCTGGACAGCTACGCGAGCCTCGGCAAGTTTGACATCGTGTTCTGCCGCAACGTGCTGATCTACTTCTCCGCCGAGGTTAAGAAGGACATCCTGT TGCGTATCCACAGCACGTTGAAGCCCGGCGGTTATCTGTTCCTCGGTGCTTCCGAAGCGCTGAACGGATTGCCCGATCATTACCAGATGGTCCAGTGCAG CCCGGGGATTATCTACCAGGCGAAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCATTCGGTGTCATCAAAAACGGGAGTCCTCAAAGACTCCCGTTTTTTTTGCCCGATGATTTCCAACTGACACCGCATGTAGGAGCCGGCTTGCTGGCG ATCCAGGCGCCGCAGTCATCCAGACAGACCGCGTCATCGTTCATCGCCAGCAAGCCGGCTCCTACAGGGTGAGGCCAAGCGGCAGAAAAGCGGCATCCAG CGGAAGCCGGTTGCCGCTTTTCTGGCATTGCCGCGTTGCCACTGCCCGCAAAGCCCCGGTTTATGGGCTTTTTTGAATTGGCATGACGCTTGCTATGTTC ATCGTACGAAAAATCAGGTCACCCGAAGGTTTCCCGACATGAGCATCAGCTTCGATAAAGCGCTCGGCATTCACGAAAAGGCACTGGGCTTCCGCGCCCA GCGTGCCGAAGTCCTGGCCAACAACATCGCCAACGCCGATACCCCGAACTACAAGGCGCGGGATCTGGAATTCTCGAAAGTGCTCGAGGCGCAGAACGAT
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| Amino Acid Sequence |
>chemotaxis protein CheR
MSTGNLDFEQFRVFLEKACGILLGENKQYLVSSRLNKLMEQQGIKSLGELVQRMQTQPRSGLREQVVDAMTTNETLWFRDTYPFEVLKNKVLPEAIKASP GQRLRIWSAACSSGQEPYSLSMSIDEFERVNMGQLRMGVQIVATDLSGTMLNNCKTGEYDSLAIGRGLSPERLQRYFDPKGPGRWAIKAPIKSRVEFRSF NLLDSYASLGKFDIVFCRNVLIYFSAEVKKDILLRIHSTLKPGGYLFLGASEALNGLPDHYQMVQCSPGIIYQAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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