Pseudomonas aeruginosa UCBPP-PA14, PA14_69690 (dapF)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
CGACTACATCCGCGCCATCCGCGAGCGCCTGCATGGCCGCGACCTGACCCTGGTGTTCGAGCCGGGCCGGTCCATCGTCGCTAACGCCGGCGTGCTGCTG ACCCGCGTCGAGTACCTCAAGCACACCGAGCACAAGGATTTCGCCATCGTCGACGCGGCGATGAACGACCTGATCCGCCCGGCTCTCTACCAGGCCTGGA TGGACGTGCAGGCGGTACGCCCGCGCGATGCCGTGCCGCGCCGCTACGACCTGGTCGGGCCGATCTGCGAGACCGGCGACTTCCTCGCCAAGGATCGCGA CCTGGCGCTCGCCGAAGGCGACCTCCTGGCGGTGCGCTCGGCCGGCGCCTACGGCTTCGTCATGAGCTCGAACTACAACACCCGCGGTCGCGCCGCCGAG GTGCTGGTGGATGGCGAGCAGACCCACGAGGTCCGTCGCCGCGAGACCGTCCAAGAGCTCTACGCCGGCGAAAGCCTGCTGCCGCAGTGAGGCCCAGACT
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| DNA Sequence for Gene |
>PA14_69690
|dapF
ATGCTTTTGCGCTTCACCAAGATGCATGGCCTGGGCAACGACTTCATGGTCCTCGACCTGGTCAGCCAGCACGCCCATGTGCAGCCCAAGCACGTCAAGC TCTGGGGCGACCGCAACACCGGGGTCGGCTTCGACCAGTTGCTGATCGTCGAAGCCCCGAGCAGCCCCGACGTCGACTTCCGCTACCGGATTTTCAACGC CGACGGCTCCGAGGTCGAGCAGTGCGGCAACGGCGCCCGCTGCTTCGCCCGCTTCGTTCAGGACAAGCGCCTGACGGTGAAGAAGAGCATCCGCGTAGAA ACCAAGGGCGGCATCATCGAGCTGAATATCCGCCCGGACGGCCAGGTCACGGTGGACATGGGTCCGCCGCGCCTGGCCCCGGCCGAGATACCGTTCCAGG CCGAGCGCGAAGCCTTGTCCTATGAGATAGAGGTGAATGGCCAGCGCGTCGAACTGGCCGCGGTATCCATGGGCAATCCCCATGGCGTGCTGCGCGTCGA GAACGTCGACAGCGCACCGGTACACAGCCTCGGTCCGCAACTGGAAGTCCATCCGCGCTTCCCGAAGAAGGCCAACATCGGCTTCCTCCAGGTGCTCGAT CCGCACCATGCGCGCCTGCGCGTCTGGGAGCGCGGCGTCGGCGAGACCCAGGCCTGCGGCACCGGCGCCTGCGCCGCGGCGGTTGCCGGGATTCGCCAGG GCTGGCTGCAATCGCCGGTGCAGATCGACCTCCCCGGCGGCCGCCTGCACATCGAGTGGGCAGGTCCCGGCCAGCCCGTTATGATGACCGGGCCTGCCGT CCGCGTGTATGAAGGCCAGGTCCGCCTGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGCCGTCGCCCGCGAGAACCGAGACGCTTATGACCGAGAAAAGCCAGGAACCGACAGCAGCGCTGGACGCCGAGCAGGTGGCCGCCTATCTGAGCCAGC ACCCGGAGTTCTTCGTCGAGCATGACGAGCTGATCCCCGAGCTGCGCATCCCGCACCAGCCCGGCGACGCCGTGTCGCTGGTGGAGCGCCAGGTACGCCT GCTGCGCGAGCGCAACATCGAGATGCGCCACCGGCTCTCGCAACTGATGGACGTGGCCCGCGAGAACGACCGCCTGTTCGACAAGACCCGCCGCCTGGTC CTCGACCTGCTCGACGCCACCAGCCTGGAAGACGTGGTCAGTACCGTCGAGGACAGCCTGCGCCACGAGTTCCATGTGCCCTACGTGAGCCTGATCCTGT TCAGCGACAGTAGCGTCTCGGTGGGCCGCTCGGTGAGCAGCGCGGAGGCGCACCAGGCCATCGGCGGCCTGCTCTCCGGCGGCAAGACCGTCTGCGGCGT
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| Amino Acid Sequence |
>diaminopimelate epimerase
MLLRFTKMHGLGNDFMVLDLVSQHAHVQPKHVKLWGDRNTGVGFDQLLIVEAPSSPDVDFRYRIFNADGSEVEQCGNGARCFARFVQDKRLTVKKSIRVE TKGGIIELNIRPDGQVTVDMGPPRLAPAEIPFQAEREALSYEIEVNGQRVELAAVSMGNPHGVLRVENVDSAPVHSLGPQLEVHPRFPKKANIGFLQVLD PHHARLRVWERGVGETQACGTGACAAAVAGIRQGWLQSPVQIDLPGGRLHIEWAGPGQPVMMTGPAVRVYEGQVRL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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