Pseudomonas aeruginosa UCBPP-PA14, PA14_68710

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006139 nucleobase-containing compound metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00732
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.3500.10 - IPR023323 Tex-like domain superfamily 115 502 0.0
SMART SM00732 rnase_8s IPR006641 YqgF/RNase H-like domain 329 428 4.2E-41
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 474 560 4.45E-28
Pfam PF16921 Tex protein YqgF-like domain IPR032639 Tex protein, YqgF-like domain 330 455 4.9E-53
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 564 636 1.78E-20
FunFam G3DSA:1.10.10.650:FF:000001 S1 RNA-binding domain 1 - - 1 114 1.2E-40
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 642 729 1.72E-25
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 653 724 1.6E-24
MobiDBLite mobidb-lite consensus disorder prediction - - 720 765 -
PANTHER PTHR10724 30S RIBOSOMAL PROTEIN S1 - - 43 739 0.0
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 635 730 2.8E-31
FunFam G3DSA:3.30.420.140:FF:000001 RNA-binding transcriptional accessory protein - - 328 455 8.2E-55
Gene3D G3DSA:1.10.150.310 - - - 503 634 8.6E-54
SUPERFAMILY SSF158832 Tex N-terminal region-like - - 4 324 3.27E-115
FunFam G3DSA:2.40.50.140:FF:000051 RNA-binding transcriptional accessory protein - - 638 728 1.2E-39
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 653 724 5.0E-20
Pfam PF12836 Helix-hairpin-helix motif - - 495 559 4.4E-29
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 325 473 4.32E-53
CDD cd05685 S1_Tex IPR044146 Tex, S1 domain 655 722 2.80767E-37
Pfam PF09371 Tex-like protein N-terminal domain IPR018974 Tex-like protein, N-terminal 19 197 5.1E-67
Gene3D G3DSA:3.30.420.140 - IPR037027 YqgF/RNase H-like domain superfamily 328 455 0.0
Pfam PF17674 HHH domain IPR041692 HHH domain 9 565 634 8.8E-26
FunFam G3DSA:1.10.150.310:FF:000001 RNA-binding transcriptional accessory protein - - 503 634 8.0E-49
Gene3D G3DSA:1.10.10.650 - IPR023319 Tex-like protein, HTH domain superfamily 1 114 4.7E-43

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.