Pseudomonas aeruginosa UCBPP-PA14, PA14_64910

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:3.40.190.10:FF:000017 Glycine cleavage system transcriptional activator - - 167 264 1.1E-30
Gene3D G3DSA:3.40.190.10 - - - 167 264 1.2E-44
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 9 88 1.6E-24
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 94 299 3.08E-41
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 12 69 1.8E-21
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 10 303 3.8E-74
Gene3D G3DSA:3.40.190.10 - - - 101 291 1.2E-44
Coils Coil Coil - - 29 49 -
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 46 57 3.8E-9
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 94 295 2.5E-39
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 36 46 3.8E-9
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 25 36 3.8E-9
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 117 5.75E-23
FunFam G3DSA:1.10.10.10:FF:000038 Glycine cleavage system transcriptional activator - - 7 90 7.6E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.