Pseudomonas aeruginosa UCBPP-PA14, PA14_64780

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00039
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR30118 HTH-TYPE TRANSCRIPTIONAL REGULATOR LEUO-RELATED - - 2 294 2.0E-89
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 21 32 3.8E-6
Gene3D G3DSA:3.40.190.10 - - - 167 264 7.3E-58
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 42 53 3.8E-6
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 94 292 2.2E-24
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 2 86 7.48E-21
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 88 291 1.05E-38
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 6 61 2.2E-17
Gene3D G3DSA:3.40.190.10 - - - 89 288 7.3E-58
CDD cd08459 PBP2_DntR_NahR_LinR_like - - 96 292 1.95605E-75
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 32 42 3.8E-6
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 1 87 1.9E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.