Pseudomonas lutea DSM 17257, LT42_RS24290
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lutea strain DSM 17257 Contig004, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AACAATCGTATCAACGGCACCTTGCTCAGCCAGAGCGGTGACCGTTGCGTGGTGGGCCTGGCTCGCGGCGAAAAGGTCGAAGCCCTGGCCATCAACGTCG GCGCTACGGGAAGCCCGGTGACGCTGTCGATCCGCCCCGAACGCGTGAACCTCAACGGCCGCAGCGAGAGTTGCGTTAACCGGTTTTCGGGGCGCGTGGC CGAATTTATCTACTTGGGTGACCACGTACGGGTGCGTCTGGAAGTGGCCGGTAAAACCGACTTCTTCGTGAAGCAGCCCATCGCGGAGCTCGATCCGGGG CTCAGCGTTGGCGATGTCGTGCCCCTTGGATGGCAGGTCGAGCATGCCCGCGCGCTGGACCCGTTGCTGGATACGCATTGATTCACCTGCCATAGGCGTC ACCCGAAGAGAGCCACCCGAAGAAAGTCACCCGAAGAAACCAGAGGCGAGCCAATCGCCCCCCAACGCTTAACCATCACAGTTCGTGGAGAGAAAAAATA
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| DNA Sequence for Gene |
>LT42_RS24290
ATGCTCAAGACATTGAAGCTCACCGCCTTATCGGTCGGGATGATGTGCGCGGCGCAAGCCATGGCAGCGGACCTGACCGTCATTTCCTTCGGTGGCGCTA ACAAGGCGGCCCAGGAAAAAGCGTTCTATGCGCCGTGGGAAAAAGCCGGCAACGGCAAGATCATTGCGGGCGAATACAACGGTGAGATGGCCAAGGTCAA AGCCATGGTCGACACCAAGAGCGTGACGTGGGACCTGGTGGAAGTGGAGTCGCCAGAACTGTCCCGTGGTTGTGATGAAGACATGTTCGAGTCGCTGGCG TCGGTCGATCTCGGCAACAAGGACAACTACGTCAAAGGCGCAATCTCTGAGTGCGGCGTAGGCTTCTTCGTGTGGTCCACCGTGCTGGCCTACAACGCCG ACAAGCTGAAATCTGCCCCAACGGGCTGGGCTGATTTCTGGGACACCGAGAAATTCCCGGGCAAGCGTGGCCTGCGCAAGGGCGCCAAATACACACTGGA ATTCGCGCTGATGGCCGACGGTGTTGCGCCTAAAGACGTTTACAAAGTGCTGGCGACCAAGGAAGGCCAGGACCGCGCCTTCAAGATGCTCGACAAGCTC AAGCCAAGCATCCAGTGGTGGGAAGCGGGCGCACAGCCGCCGCAATACCTGCAGTCTGGCGACGTCGTGATGAGCTCGGCCTATAACGGTCGCATCGCTG CCGTGCAGAAAGAGAGCAACCTCAAAGTGGTCTGGACTGGCGGCGTGTATGACTTCGACGCATGGGCCATTCCGAAGGGCGCCAAAAACGCCGAAGAAGC CAAGAGGTTCATCGCCTACTCGCTCAAGCCCGAGCAGCAAAAGATTTACTCCGAAAATATCGCTTACGGCCCGGCCAACACTGGGGCCGTGCCGCTGTTG AGCGCCGACACGCTGAAAAACATGCCGACCACTCCCGAGAACATCAAGGATCAGGTGCAGATCGACGTGAAATTCTGGGCCGATTTTGGTGAGTCCCTGG AGCAGCGCTTCAACTCTTGGGCCGCCAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GAGCACTGCCCGATAAGCGCTTCGTTGTGAGTTAGATCCGGGTGCGTCGTCTGAACTGTCTGAAAACAGGGCAGGGGGCGCGCTCTTTGTCAGAAGATTT CGGAGTTCACTATGGCCATCGCCGTGCCCCTGTCTGAAGGCGCCAGCCCGACCCTGAAGCAACGCCTGGCCCGTGCCGAGCGCGTCAATCGCTGGAAGGC TCAAGCACTGATCGCGCCCTTGGTGATCTTCCTGCTGCTGGTGTTTCTGGTGCCAATTGCGGCGTTGCTCTACAAAAGCGTCAGCAACCCGGAAGTGGTG GGCGGCATGCCGCTGACCGTGGTCGAAGTGGCGAAGTGGGACGGAAAGGGGCTGCCACCTGAGACAGTGTACAAAGCCGCCAGCCAGGATCTGGCCGAGG CACGCAAGAATCAGACGCTGGGCGATCTGTCCAAACGCCTGAATCAGGAACTGGCGGGCTACCGCAGCCTGCTGGCGAAAACCGCCCGCGCCATGCCGTT
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| Amino Acid Sequence |
>spermidine/putrescine ABC transporter substrate-binding protein
MLKTLKLTALSVGMMCAAQAMAADLTVISFGGANKAAQEKAFYAPWEKAGNGKIIAGEYNGEMAKVKAMVDTKSVTWDLVEVESPELSRGCDEDMFESLA SVDLGNKDNYVKGAISECGVGFFVWSTVLAYNADKLKSAPTGWADFWDTEKFPGKRGLRKGAKYTLEFALMADGVAPKDVYKVLATKEGQDRAFKMLDKL KPSIQWWEAGAQPPQYLQSGDVVMSSAYNGRIAAVQKESNLKVVWTGGVYDFDAWAIPKGAKNAEEAKRFIAYSLKPEQQKIYSENIAYGPANTGAVPLL SADTLKNMPTTPENIKDQVQIDVKFWADFGESLEQRFNSWAAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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