Pseudomonas lutea DSM 17257, LT42_RS19905
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lutea strain DSM 17257 Contig002, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGGACTCGTTCGCCCGTTTCGATGCCGATCTGGCATTGTCGGTTGCCCAATACGACAAGAACATTGATCGTGAGTACAAAACCGCGCTCCGCGAGCTG GTCACCTACATGATGGAAGACCCGCGTTCGATCTCTCGCGTGCTGAACGTGATTTGGGTGCTGCGCTCTCTGGAACGTATTGGCGACCACGCGCGCAACA TCTCCGAGCTGGTGATCTATCTGGTGCGTGGCACCGACGTTCGTCACTTGGGGCTCAAGCGCATGCAGGAAGAAGTCAAAGGCCTGACCGCCGAAAGGAT TAATGTTCTGGACGCCCCTGACGATAAATAAGATTGCCTGAGATAAAACGCCTGGCAACCGCCGGGCGTTTTTGTTTTTCCGGTCCGTCTTTTTTAAGTC ACCCGCGAATAAAAGTCCCGGTGTCGTCAAACAGTTTGGCAGCTGGCTACCCGCCAGCGAATGCTCGCCACTTACGGTGAACACGCCATCAGGAGCGTCG
|
|
| DNA Sequence for Gene |
>LT42_RS19905
ATGAGTAAAGTCAGTGTATTGGTGGTGGATGACGCGCCGTTCATCCGCGATCTGGTCAAGAAAGGATTGCGCAACGCCTTCCCGGGAATTGCCCTGGAAG ACGCAGTCAACGGACGCAAGGCGCAAGTCCTGCTGAGCCGTGAAGTGTTCGATCTGGTGTTGTGTGACTGGGAAATGCCCGAGATGTCCGGGCTCGAGTT GCTGACCTGGTGCCGTCAGCAGGAAAGCCTGAAGACCATGCCGTTCATCATGGTCACCAGCCGTGGCGATAAGGAGAACGTGATTCAGGCGATCCAGGCC GGCGTGTCGGACTTCATCGGCAAGCCTTTCACCAACGAGCAATTGCTGACCAAGGTCAAAAAAGCGTTGCACAAGGTCGGCAAACTGGACGCCCTGATGT CCAGCGGACCCGCACGGGTAAACGCGGCGTTCGCCAACGACTCGCTCAGTGCCTTGACGGGCAACCGCCCCGAAGTGGTCAGCCAGGCCCCGGGTCTATC GGCAGCACCACAGGCCGCCAAGCCTCTGATTCAGCCTGTGGCCAAAGCTGCCCCTTCTGCTGCGCCAACGGGTCGTGGCCAAGGGCAATTGCGCCTTCCC ACTGGCAATCAGCCCTGCGTAATTAAAGCGCTGACGCTCAAGGAAGCTTCGCTGCTGGTCCGTCGTGGCGAGGTATTGCCGCAGATTCTGGACAGCGCCG TGCTCGACCTGGAGCAGGGCGACAACGCAGAAGTAGCGCGCCTCAACGGGTATCTGCACGCTATCGCTGCGTTTGAACAGAAGCCAGACAGCGAGTGGCT GCAGTTGACCTTCCGCTTCGTCGACCAGGACACGCAGAAGCTGGATTACCTCTCGCGACTGATCGCCCGTGGCACCGCGCAGAAGCACTTCGTCCCTGGC GCTTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCAAGCAATGGCTTTGCTCGCGAAGACTTCGGAACAGCCGTCCAAACGTTCCTCGTCCGTCTTCGCGCGCAGCGCACTTGCAACGGTAGCGTCTTTGCT GCGCTACCGAGCAATAGCGCCATCTTTACGTCCGTCAGAACTGCCTGACGAACCGCACTCGCACTCAGCATAGAAATTGCACCTCACATCGCGCCCCGTG CTGACGCGATTTCCTTGACGCTTCGTCTATTACCGATTGATTCGGATGAGTCCTCTTGCGTCGTCATCGCTGTTAGGCTGGGCGCCATCCTTTCACTTAC CAGGCCTGTCCAGATGTTAGAGCGCGTGCTGGTTGTCTGTGCCTTACTGCTGGCCACGCAGACCGCCGGGGCAGTGACTATCTATCGGTTTACCGACGCC AATGGAGTGGTCTCTTTCACCGATCAGCCCGTGCGCGGTGCCGAGGTCATGAAGCTGCGCGAACGCATGGTCGAGCGCATCGACAGCCAAGTGCGCCTCA
|
|
| Amino Acid Sequence |
>chemotaxis protein CheY
MSKVSVLVVDDAPFIRDLVKKGLRNAFPGIALEDAVNGRKAQVLLSREVFDLVLCDWEMPEMSGLELLTWCRQQESLKTMPFIMVTSRGDKENVIQAIQA GVSDFIGKPFTNEQLLTKVKKALHKVGKLDALMSSGPARVNAAFANDSLSALTGNRPEVVSQAPGLSAAPQAAKPLIQPVAKAAPSAAPTGRGQGQLRLP TGNQPCVIKALTLKEASLLVRRGEVLPQILDSAVLDLEQGDNAEVARLNGYLHAIAAFEQKPDSEWLQLTFRFVDQDTQKLDYLSRLIARGTAQKHFVPG A
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|