Pseudomonas lutea DSM 17257, LT42_RS17255
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lutea strain DSM 17257 Contig002, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGCAGCCTGGGCCTGCTGCTGGACGGGGAACAGCGCCGGTTCGCTGCTCCACCAGATACCGAGGACGACGGTGATGACCAGATAGATACCCACCACGGCG CCGACAGCGCGACTGAACAACAGGCCTCCCCAATAGCTGCGGGAGCCGCGTGGTGCCTTACCCATCGGCTTTTCGTCAGCGCGTTCAGTTCCCGCGCTGC CCGGGCGTTTCTTCCAATCCAGCATGGCCTAGTCCTTTCAATCACGGAATTCAGTGCTTCTGACCGCAACCTTACAGCAAGGTGCGTTTGTCAGGAATGT GATGGCAGCGGCAATTGTTTAGCAGCTGAGTCGGGCACTTGCAGGGATAAAGCGGGAACCACAAATAGCTAAAGCTGGAAATTTGAACGACATGGCAGTC AAAAGGACCGGAAACTGACTTAAGGCAATTCGGATGAGGGTAACAAGTGATACCATAGCGCCATCATTTGTATCGGCGTCTCCCTATAAAGAAGTCAGCC
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| DNA Sequence for Gene |
>LT42_RS17255
ATGACCGAAGCTGCAGACCCGAGCCGCGACCGGCTCAAACACCACTTTGCCCAGCGCGTTATCCATCAGGCCCGTCAGATTCTTGAGGTGTGGCAGCGCC TGCAGCAAAGTGAATGGTCTGCTACGGATATGGTGGAAATCACCGAAGCCAATCAGCGGCTTCTGCGCTTCGCTGAACGCTTCGAACAGGTCGAGCACGT GCAACTGGCCACCGCGATCAACCTCTCGCTGGTGGACATCGAAGCCAACCGTGGGCGCTTGAGCAGCACGCTGATTACAGACCTCAATCGTCTGATGCAG CGCCTTTCCCGGACAGGCTTGCGACACGGCGACCGGCTGGAACAAACGATCTTGCCGCCCCTGCGCAAGCCCATCTACATCGCTTTACAGGATCCCGAGC GGGGCGAACGGCTGGCCCAACAGCTGGAATTTTTTGGGCTGAGTGCGCAATCGCTTGGCAATGTCGACACTTTCCACATGACCATGGCCGAACGCTTGCC GGCCGCGGTCGTGATGGATGTGGATTTCAATGGCGCAGGCGCGGGTTTGACTCTCGCCACCCAGATGCAGGAAGGACTCGAACAGAAACTGCCGTTACTG TCTTTCAGTCACCTCGACACTGACACGCCGACCCGCCTGGCTGCGGTGCGCGCCGGCGGCGAAGAATTTTTGACCGGCACGCTCGACGCGTCGAGTCTGC TGGAAAAGATCGAAATCCTGACTCGCGTTGCGCAATACGAGCCTTACAAAGTGCTCATCATCGATGACTCCCGAGCGCAGGCGAAGCACACGGAAGGCCT GCTGAACAGCGCCGGCATCGTCACCCGCACGCTGCTTGATCCGATCAAGGCCATGCTGGAGCTGGCGGAGTTTCAACCTGACCTGATCATCCTCGACATG TACATGCCCGGCTGCACAGGCACCGAACTGGCCAAGGTGATTCGGCACAACGATCGCTACGTCAGCGTGCCGATCATCTATCTTTCAGCCGAAGATGATC TGGACAAACAGCTGGACGCAATGAGCGAAGGCGGCGACGACTTTCTCACCAAACCCATCAAACCCCGCCATTTGATCACCACCGTACGCAATCGCGCGGC ACGGGCCCGCAACCTCAAAGCGCGCATGGTTCGGGATAGCCTGACTGGCCTGTACAACCACACGCACATCCTGCAATTGCTGGAGGACTGCAGCTTCCGC GCGCGGCGCGAAAACAAGCCATTGAGTTTCGCAATGCTGGACATCGACCACTTCAAACGGGTCAACGACAGTCACGGCCACCCCATGGGCGACCGCGTGA TCAAAAGCCTGGCACTGTTCCTGAAGCAACGCCTGCGCAAGACCGACTACATCGGGCGCTACGGAGGGGAAGAATTCGCGGTGGTGATGCCAGACACCGA CCTGCCGGCCGCCTATGGCGTACTCGACGAGATTCGCCAGCGATTCGCCGAAATTCACTACCCTGCGCAGCCCGCCGATCTGTGCTGCACGTTCAGCGCC GGCGTGGTGGAGATCGCCGCAGACGATGATGCCCTCATGATGGCTTCCCAGGCAGACGAAGCGTTGTACCGCGCCAAGAAAGCCGGTCGCAATCAGGTGC ATGGGCTCAGCCTTGCCGCCTCGACGCCGAGCAGGCACCGTCATCCCGACATCGTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGGATAGGTCCTACACCATTTTCAGACCGAAGAAATTCAACCCTCTCAGCATGTGCCCAGACACTCCGCTATCATGCGCGGACTTTTGTGATGCGAGAC CGCCATGCGCCGCCTGCTTTGTCTGTTGCTGCTGATCTGTGCCCTGCCCGCCTTCGGCGCGAGCTTTCTGGAGAACAGACCGAGCCCCACTCTCGGCGGC CCAGCAGTCGATAACAGCAAGGATTTCCTGCCCGTTCGCCAGGCGTTCCAGCTGAACCTGTCCGACACAACACCCGACGCCATCAAGCTGCAGTTCATTG CCACCGAAGGCTACTACCTTTACCGCCACCGCTTTCAGTTTCGCACCGAGCCCGCCGACATCGGCCTGGGCGCTGCGCAATTGCCGGACGGCGAGAAAAA ACATGACGAGTACTTTGGCGACGTCGAGGTTTATCACGGCATCCTTGACGTCAGCCTGCCACGCAAGCGAGGGGACAGCCGCCATTTCACGCTGGTTGTC
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| Amino Acid Sequence |
>diguanylate cyclase
MTEAADPSRDRLKHHFAQRVIHQARQILEVWQRLQQSEWSATDMVEITEANQRLLRFAERFEQVEHVQLATAINLSLVDIEANRGRLSSTLITDLNRLMQ RLSRTGLRHGDRLEQTILPPLRKPIYIALQDPERGERLAQQLEFFGLSAQSLGNVDTFHMTMAERLPAAVVMDVDFNGAGAGLTLATQMQEGLEQKLPLL SFSHLDTDTPTRLAAVRAGGEEFLTGTLDASSLLEKIEILTRVAQYEPYKVLIIDDSRAQAKHTEGLLNSAGIVTRTLLDPIKAMLELAEFQPDLIILDM YMPGCTGTELAKVIRHNDRYVSVPIIYLSAEDDLDKQLDAMSEGGDDFLTKPIKPRHLITTVRNRAARARNLKARMVRDSLTGLYNHTHILQLLEDCSFR ARRENKPLSFAMLDIDHFKRVNDSHGHPMGDRVIKSLALFLKQRLRKTDYIGRYGGEEFAVVMPDTDLPAAYGVLDEIRQRFAEIHYPAQPADLCCTFSA GVVEIAADDDALMMASQADEALYRAKKAGRNQVHGLSLAASTPSRHRHPDIV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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