Pseudomonas aeruginosa UCBPP-PA14, PA14_60830 (mexD)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome. [Details] | |
| DNA Sequence Upstream of Gene |
GCACCTTGGCCGCCGGCGACAGCCAGGCGCTGACCCTGCGCGTCGAAGGGACGCCCTACGAGCGCCAGGGCGCGTTGCAGTTCGCCGACGTGGCGGTGGA TCGCGGCACCGGCCAGATCGCCCTGCGCGGCAAGTTCGCCAACCCCGACGGGGTCCTGCTGCCGGGCATGTACGTGCGCGTACGTACGCCCCAGGGCATC GACAACCAGGCGATCCTGGTGCCGCAACGGGCCGTGCGCCGCTCCAGCGACGGCAGCGCCCAGGTGATGGTGGTGGGCGCCGACGAGCGCGCCGAGGCGC GCAGCGTCGGTACCGGCGTCATGCAGGGGTCGCGCTGGCAGATCACCGAGGGCCTGGAGCCGGGTGACCGGGTCATAGTCGGCGGCCTGGCTGCGGTGCA GCCGGGGGTGAAGATCGTGCCGAAGCCGGATGGTGCCCAGACGCAAGCCCAGTCGTCCGTGCCGCAACAGTAAGGGCGGGTTCGCCCCGAGGATTTTCCG
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| DNA Sequence for Gene |
>PA14_60830
|mexD
ATGTCCGAATTCTTCATCAAGCGGCCGAACTTCGCCTGGGTGGTGGCCCTGTTCATCTCCCTGGCCGGCCTGCTGGTCATTTCCAAATTGCCGGTAGCGC AGTACCCCAATGTCGCGCCGCCACAGATCACCATCACCGCCACCTATCCCGGCGCCTCGGCGAAGGTGCTGGTGGACTCCGTCACCAGTGTGCTCGAGGA GTCGCTGAACGGCGCCAAGGGCCTGCTCTACTTCGAGTCGACCAACAACTCCAACGGCAGCGCCGAGATCGTCGTCACCTTCGAGCCGGGCACCGATCCG GACCTGGCCCAGGTGGACGTGCAGAACCGCCTGAAGAAAGCCGAGGCGCGCATGCCGCAGGCGGTGCTGACCCAGGGCCTGCAGGTCGAGCAGACCAGCG CCGGTTTCCTGCTGATCTATGCGCTCAGCTACAAGGAAGGCGCTCAGCGCAGCGACACCACCACCCTCGGCGACTATGCCGCGCGCAATATCAACAACGA GCTGCGGCGCCTGCCGGGCGTCGGCAAGCTGCAATTCTTCTCTTCCGAGGCGGCCATGCGGGTCTGGATCGATCCGCAGAAGCTGGTGGGCTTCGGCCTC TCCATCGACGACGTGAGCAATGCCATCCGCGGGCAGAACGTGCAGGTGCCGGCCGGCGCCTTCGGCAGCGCGCCGGGCAGTTCCGCGCAGGAGCTGACGG CGACCCTGGCGGTGAAGGGCACCCTGGACGATCCGCAGGAGTTCGGCCAGGTGGTGCTGCGCGCCAACCAGGACGGCTCGCTGGTCCGGCTCGCCGATGT CGCGCGCCTGGAACTCGGCAAGGAGAGCTACAACATCTCCTCGCGGCTGAACGGCACGCCCACCGTGGGCGGGGCGATCCAGCTGTCGCCCGGGGCCAAC GCGATCCAGACCGCTACCCTGGTGAAACAGCGTCTCGCCGAACTGTCGGCGTTCTTCCCCGAGGACATGCAGTACAGCGTGCCCTACGACACTTCGCGCT TCGTCGACGTGGCCATCGAGAAGGTGATCCACACCCTGATCGAAGCGATGGTCCTGGTGTTCCTGGTGATGTTCCTGTTCCTGCAGAACGTCCGCTACAC CCTGATCCCGTCCATCGTGGTGCCGGTGTGCCTGCTGGGTACGCTGATGGTGATGTACCTGCTGGGGTTCTCGGTGAACATGATGACCATGTTCGGCATG GTCCTGGCGATCGGCATCCTGGTGGACGACGCCATCGTGGTGGTGGAGAACGTCGAGCGGATCATGGCGGAGGAGGGGATTTCCCCGGCCGAGGCCACGG TCAAGGCGATGAAGCAGGTGTCCGGCGCCATCGTCGGCATCACCCTGGTGCTCTCGGCGGTGTTCCTGCCGCTGGCTTTCATGGCCGGTTCGGTGGGGGT GATCTACCAGCAGTTCTCGGTGTCGCTGGCGGTCTCGATCCTGTTCTCCGGCTTCCTCGCCCTGACCTTCACCCCGGCGCTGTGCGCCACGCTGCTCAAG CCCATTCCCGAAGGGCACCACGAGAAGCGCGGCTTCTTCGGCGCCTTCAACCGTGGCTTCGCCCGCGTCACCGAGCGCTATTCGCTGCTCAACTCGAAGC TGGTGGCGCGCGCCGGACGCTTCATGCTGGTGTACGCCGGCCTGGTGGCCATGCTTGGCTACTTCTACCTGCGCCTGCCGGAAGCCTTCGTGCCGGCGGA AGACCTCGGCTACATGGTGGTCGACGTGCAACTGCCGCCTGGCGCTTCGCGCGTGCGCACCGATGCCACCGGCGAGGAACTCGAGCGCTTCCTCAAGTCC CGCGAGGCGGTGGCTTCGGTGTTCCTGATCTCGGGCTTCAGCTTCTCCGGCCAGGGCGACAATGCCGCGCTGGCCTTCCCGACCTTCAAGGACTGGTCCG AGCGAGGCGCCGAGCAGTCGGCCGCCGCCGAGATCGCCGCGCTGAACGAGCATTTCGCGCTGCCCGACGACGGCACCATCATGGCCGTGTCGCCGCCACC GATCGACGGCCTGGGCAACTCCGGCGGTTTCGCCCTACGCCTGATGGACCGCGGTGGCGTCGGCCGCGAGGCCTTGTTGCAGGCCCGCGATACCTTGCTC GGCGAGGTCCAGACCAACCCGAAATTCCTCTACGCGATGATGGAAGGCCTGGCCGAAGCGCCGCAACTGCGCCTGTTGATCGACCGGGAGAAGGCCCGCG CCCTGGGGGTGAGCTTCGAGACCATCAGCGGCACGCTGTCCGCCGCCTTCGGCTCGGAGGTGATCAATGACTTCACCAATGCGGGGCGCCAACAGCGGGT GGTGATCCAGGCCGAACAGGGCAACCGGATGACCCCGGAAAGCGTGCTCGAGCTATACGTGCCTAACGCTGCTGGCAACCTGGTACCGCTCAGCGCCTTC GTCAGCGTGAAATGGGAAGAGGGACCGGTGCAATTGGTGCGCTACAACGGCTACCCGTCGATCCGCATCGTCGGTGACGCCGCGCCCGGCTTCAGCACCG GCGAAGCCATGGCGGAAATGGAGCGCCTGGCCGCGCAACTGCCGGCCGGCATCGGCTACGAGTGGACCGGCCTGTCCTATCAGGAGAAGGTCTCCGCCGG GCAGGCCACCAGCCTGTTCGCCCTCGCCATCCTGGTGGTCTTCCTGTTGCTGGTGGCGCTCTACGAGAGCTGGTCGATCCCGCTGTCGGTGATGCTGATC GTGCCGATCGGCGCCATCGGCGCGGTGCTCGCGGTAATGGTCGCGGGTATGTCCAACGACGTGTATTTCAAGGTCGGCCTGATCACCATCATCGGTCTTT CGGCGAAGAACGCGATCCTCATCGTCGAGTTCGCCAAGGAACTCTGGGAGCAGGGGCACAGCCTGCGCGACGCCGCCATCGAGGCCGCGCGCCTGCGCTT CCGACCGATCATCATGACTTCCATGGCGTTCATCCTCGGCGTGGTACCCCTGGCCCTGGCCAGCGGCGCCGGCGCGGCGAGCCAGCGCGCCATCGGCACC GGAGTGATCGGCGGGATGCTCAGCGCCACGTTCCTCGGCGTGCTGTTCGTACCCATCTGTTTCGTCTGGCTGCTGTCGCTGCTGCGCAGCAGGCCGGCGC CCATCGAACAGGCCGCTACGGCCGGGGAGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAGATGCGCAAACCTGCATTCGGCGTATCGGCGTTGCTGATCGCCCTGACCCTCGGCGCCTGCTCCATGGCGCCGACCTACGAACGTCCCGCCGCGCC GGTGGCCGACAGCTGGAGCGGCGCCGCCGCCCAGCGCCAGGGCGCGGCGATCGACACGCTGGACTGGAAGAGTTTCATCGTCGATGCCGAACTACGCCGC CTGGTGGGCGTGGCCCTGGATAACAACCGCTCGCTGCGCCAGACCCTCCTGGATATCGAGGCGGCCCGCGCGCAGTACCGCATCCAGCGCGCCGACCGGG TTCCGGGCCTGAATGCCGCTGCCACCGGCAACCGCCAGCGGCAGCCGGCCGACCTGTCCGCCGGCAATCGCTCGGAAGTGGCCAGCAGCTACCAGGTCGG GCTGGCCCTGCCGGAGTACGAACTGGACCTCTTCGGTCGGGTCAAGAGCCTGACCGACGCAGCCCTGCAACAGTACCTGGCCAGCGAGGAGGCAGCGCGC
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| Amino Acid Sequence |
>multidrug efflux RND transporter MexD
MSEFFIKRPNFAWVVALFISLAGLLVISKLPVAQYPNVAPPQITITATYPGASAKVLVDSVTSVLEESLNGAKGLLYFESTNNSNGSAEIVVTFEPGTDP DLAQVDVQNRLKKAEARMPQAVLTQGLQVEQTSAGFLLIYALSYKEGAQRSDTTTLGDYAARNINNELRRLPGVGKLQFFSSEAAMRVWIDPQKLVGFGL SIDDVSNAIRGQNVQVPAGAFGSAPGSSAQELTATLAVKGTLDDPQEFGQVVLRANQDGSLVRLADVARLELGKESYNISSRLNGTPTVGGAIQLSPGAN AIQTATLVKQRLAELSAFFPEDMQYSVPYDTSRFVDVAIEKVIHTLIEAMVLVFLVMFLFLQNVRYTLIPSIVVPVCLLGTLMVMYLLGFSVNMMTMFGM VLAIGILVDDAIVVVENVERIMAEEGISPAEATVKAMKQVSGAIVGITLVLSAVFLPLAFMAGSVGVIYQQFSVSLAVSILFSGFLALTFTPALCATLLK PIPEGHHEKRGFFGAFNRGFARVTERYSLLNSKLVARAGRFMLVYAGLVAMLGYFYLRLPEAFVPAEDLGYMVVDVQLPPGASRVRTDATGEELERFLKS REAVASVFLISGFSFSGQGDNAALAFPTFKDWSERGAEQSAAAEIAALNEHFALPDDGTIMAVSPPPIDGLGNSGGFALRLMDRGGVGREALLQARDTLL GEVQTNPKFLYAMMEGLAEAPQLRLLIDREKARALGVSFETISGTLSAAFGSEVINDFTNAGRQQRVVIQAEQGNRMTPESVLELYVPNAAGNLVPLSAF VSVKWEEGPVQLVRYNGYPSIRIVGDAAPGFSTGEAMAEMERLAAQLPAGIGYEWTGLSYQEKVSAGQATSLFALAILVVFLLLVALYESWSIPLSVMLI VPIGAIGAVLAVMVAGMSNDVYFKVGLITIIGLSAKNAILIVEFAKELWEQGHSLRDAAIEAARLRFRPIIMTSMAFILGVVPLALASGAGAASQRAIGT GVIGGMLSATFLGVLFVPICFVWLLSLLRSRPAPIEQAATAGE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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