Pseudomonas lutea DSM 17257, LT42_RS14310 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lutea strain DSM 17257 Contig002, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CATGTACTTGAAGGAGACCACCCAGATCAGCGCCCAGAAGATCAACGAAAGAATGCCCAGCACACTGTCGTGGCCGGCTTGCACGCCGTAACCTCCGACG AAGACTTCTTTAATGGTGTACAACGGGCTGGTACCGATGTCGCCATAGGCCACACCCACCGCGCCCACCAGCAGACTCAACGGCTTGGCCGAAGAATGCC CGGCTTCTGCCTGACTCGTTGCATGAACCATTTACCACTCCTGAACCCTGACTCGAGCACTGCGATCCGGTGCTGTCGGATTGACCCGCAGCGCACCGGT AAATTCCGATGCGCCCGGCAGACGAGGCTTGCCAGGCGCAACGCCGCGAAGCATAGCGCAGCACTCGTCGTAATTCTCGGTTTAACGCTGGTCAATCCTT CGACTCGCCGCTAGAATTGCGCACTTTTTGATCAGAGGCGCACCCAGCGCCCAGTCAATGCCACGGCCGTTCGCCGGGCATCCTACGCCGAGGTTAGTCA
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| DNA Sequence for Gene |
>LT42_RS14310
|rimO
ATGTCCACCGTCACCACGTCTGCCGCCCCCAAGGTCGGCTTTGTCAGCCTGGGTTGCCCCAAGGCTCTGGTCGATTCCGAGCGCATCCTGACTCAGCTGC GCATGGAAGGCTATCAGGTCGTCCCGACCTACCAGGACGCCGACGTGGTCGTGGTCAATACCTGTGGTTTCATCGACAGCGCCAAGGCTGAATCGCTGGA AACCATTGGCGAGGCGCTGGCTGAAAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTGGACGAAAGCGTGATTCGCAGCGTCCACCCGAGCGTGCTG GCCGTTACCGGCCCGCAGCAATACGAGCAAGTGGTCAATGCTGTGCATGATGCGGCCCCACCGAAGCTGGATCACAACCCATTGATTGATCTGGTGCCGC CGCAAGGGGTCAAGTTGACCCCACGTCACTACGCGTACCTGAAGATCTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCCATGCGCGG CAAACTGGTCAGCCGCCCGATTGGCGACGTCCTCGACGAGGCGCAGCGCCTGGTCAAGGCCGGCGTCAAAGAGCTGCTGGTGATTTCTCAGGACACCAGC GCCTACGGCGTAGACGTCAAATACCGTACCGGTTTCTGGGACGGCCAGCCTGTCAGAACACGCATGACCGAGCTGTGCCAGGCGCTGAGCTCTCTGGGCG TCTGGGTGCGCCTGCATTACGTGTATCCGTACCCGCACGTTGACGAGATCATTCCACTGATGGCGGCGGGCAAAATCCTGCCCTACCTGGACATCCCGTT CCAGCACGCCAGCCCGAAAATCCTCAAGCTGATGAAGCGTCCGGCCTTCGAAGACAAAACCCTGGCGCGTATCAAGAACTGGCGCGAGCAGTGCCCGGAC CTGATCATCCGCTCGACCTTCATCGTCGGCTTCCCGGGCGAGACCGAAGAAGACTTCCAGTACCTGCTGGACTGGCTGACCGAAGCCCAGCTTGACCGCG TTGGCTGCTTCCAGTACTCCCCTGTCGAAGGCGCGCCGGCAAACCTGCTGGATGCGCCGATCGTGCCGGACGACATCAAGCAGGATCGCTGGGACCGCTT CATGGCGCACCAGCAGGCCATCAGTGCAGCACGTCTGCAGATGAAAATCGGCAAAGAGATCGAAGTGCTGATCGATGAAGTGGACGAGCAAGGCTTCGTC GGTCGTTCGTTCTTCGACGCGCCGGAAATCGACGGCAACGTCTTTGTCGAAAGCGACCGTGACTTCAAGCCGGGCGACAAAGTCATGTGCCGTGTAGTGG ATGCGGATGAGTACGACTTGTGGGCTGAGCCAATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCGCGACGCGGTCGAACAGCCACTGCACCCATCACAGCCCTGCCCGTAAAACGGCGGGGTTTGTTTTTTCTGGTTATCGTCCCCACATGAAGTCGACAC CCAGGGAGCAGCAGCAACCATGACCCACCCGTCGGTCATCTACTTACCCAGGCAGCAGGATTTCGCCGAGCTCACCCGAGTCTGGGAGGCCTCGGTACGG GCAACTCACGACTTTTTGCCGGATGACTACATCGCACTGCTTCGGCACCTTCTGGAAACGCAATACCTGGGCGCCGTTAATCTTTTCTGCACCCGTGATT CGCATCTGCGTATCACCGGATTCGCCGGCACTACGCCAGGCAAGCTCGAGATGCTGTTCATCCATCCCGACTTCCGTGGCATAGGCTTGGGCAAGAAGCT GCTGGACTATGCCATCGAGCATTTCCAGATCACCGAGCTGGACGTCAACGAACAGAATCCGCAAGCACTGGGGTTCTATCAGCGACAGGGCTTCGAGGAA
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSTVTTSAAPKVGFVSLGCPKALVDSERILTQLRMEGYQVVPTYQDADVVVVNTCGFIDSAKAESLETIGEALAENGKVIVTGCMGVDESVIRSVHPSVL AVTGPQQYEQVVNAVHDAAPPKLDHNPLIDLVPPQGVKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPIGDVLDEAQRLVKAGVKELLVISQDTS AYGVDVKYRTGFWDGQPVRTRMTELCQALSSLGVWVRLHYVYPYPHVDEIIPLMAAGKILPYLDIPFQHASPKILKLMKRPAFEDKTLARIKNWREQCPD LIIRSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPANLLDAPIVPDDIKQDRWDRFMAHQQAISAARLQMKIGKEIEVLIDEVDEQGFV GRSFFDAPEIDGNVFVESDRDFKPGDKVMCRVVDADEYDLWAEPI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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