Pseudomonas lutea DSM 17257, LT42_RS04375
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lutea strain DSM 17257 Contig001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATAAAAACAACACGTATCGGCTCTGACATAACAAGAACAACACGGACAGAGACGCAGCTAACAGATTTTTTTGGAGTGGATCGCTTTACCTGAGGCACA AGCCTCACAACCGACCGAGAACAATAAAACTGTCCCAAGACAGCGACCAGGCGGATTGGATCGAAAGATCGAGGTGTATCAGCGCTCAAAAAAATACGTT TGCTCTTGGCCCCGGATGGGGGCCGCTCATAAAAGGAAAAAGGCTGGCTGCCAAAAATAACAACAGGCCACCTGAAAATAAAAAAGAGCATGCAATGACT ACTTGAAGGGGAGCCCAGGCTCCCCTTCGTGCTGTTCATCCTCCGCCAATACCCTCTCCCAACAGCCCTCCCCTTTACCCTCAAGGTTGCACTACAGCAA CACGTTGACATCTGCGCGTCCGCAGGTTTACGTTAACGTAAAGGTGACACCCCAACGCTCGATTTGACTGCCTACAAAAATAACAACGGGAATGCCGTCC
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| DNA Sequence for Gene |
>LT42_RS04375
ATGAATTACCCCACGCTCAATTTCGGCCTCGGCGAAACCCTCGACATGCTGCGCGACCAAGTCCGCGCATTTGTCGCCGCCGAGCTTGCTCCACGTGCTG CACAGATCGACAAAGACAACCTCTTCCCTGCCGACATGTGGCGCAAGTTCGGCGACATGGGCCTGCTGGGCATTACTGCCGACGAAGAATACGGCGGCGC AGGCCTGGGCTACCTGGCCCATGTGATTGCCATGGAAGAAATCAGCCGTGGGTCTGCCTCCGCAGCGCTTTCCTACGGCGCGCATTCCAATCTCTGCGTC AATCAGATCAACCGCAACGGCACCCCTGAACAGAAAGCCCGCTACCTGCCCCAGTTGATCAGCGGCGAGCACGTTGGCGCGCTGGCCATGAGTGAACCCA ACGCCGGCTCCGACGTGGTTTCGATGAAGCTGCGCGCTGACCGGCGTGGCGACCGCTTCATACTCAACGGCAGCAAAACCTGGATCACCAACGGGCCGGA TGCCAACACCTACGTGATCTACGCCAAGACCGAGCCAGAAAAAGGCGCCCATGGCATCAGCGCGTTCATCGTTGAGCGCGACTGGCACGGTTTTTCGCGC GGCAACAAATTCGACAAACTGGGCATGCGCGGCTCCAACACCTGCGAGCTGTTCTTCGACGACGTGGAAGTACCGGAAGAAAACCTGCTCGGCGCGCTGA ATGGCGGCGTCAAGGTGCTGATGAGCGGCCTCGATTACGAGCGAGTTGTGCTCTCGGGCGGTCCGGTCGGCATCATGCAGGCGTGCATGGACGTGGTGCT GCCGTACATTCATGACCGCAAGCAATTCGGTCAAAGCATCGGCGAGTTCCAGTTGATCCAGGGCAAGGTAGCCGACATGTACACGCAGCTGAACGCCAGC CGCGCCTACCTCTACGCCGTGGCCCAGGCGTGCGAGCGCGGAGAAACCACGCGCAAGGACGCCGCCGGGGTGATTTTGTATGCCGCAGAGCGGGCAACCC AAATGGCCCTGGACACCATCCAGATCCTTGGTGGCAATGGCTACATCAACGAATTTCCAGCAGGCCGACTGTTGCGCGACGCCAAGCTCTACGAGATCGG CGCCGGCACCAGTGAGATCCGCCGCATGCTAATTGGCCGCGAACTGTTCAACGAGACCCGCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CAGCGCCGGAGGCCTTATGACCACTCTGCACACCCAGCTCAACCCGCGCTCCCCGGAGTTCGCCGGCAACGACGCGGCCATGCGCAAACAGCTCGACGCG CTGCGCAATCTACTCGAACACGCTCAACGCGGTGGCGGCGCCAAAGCGCAGGAGCGCCACACCTCGCGCGGTAAATTGCTGCCCCGCGAGCGCATCAATC ACCTGCTGGACACAGGCTCGCCATTTCTGGAGCTCAGTCAGCTCGCCGCCCATGACGTATACGGCGAAGACGTGCCCGCCGCAGGCCTTATCGCGGGCAT TGGCAGGGTCGAAGGCGTGGAATGCATGATCATCGCCAACGACGCGACGGTTAAGGGCGGCAGTTACTACCCGCTGACGGTGAAGAAGCACCTGCGCGCC CAGGCGATTGCCCAGCAAAATCGTCTGCCGTGCGTTTATCTGGTGGATTCCGGTGGCGCCAATCTGCCACGCCAGGACGAGGTCTTCCCTGACCGTGAGC
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| Amino Acid Sequence |
>isovaleryl-CoA dehydrogenase
MNYPTLNFGLGETLDMLRDQVRAFVAAELAPRAAQIDKDNLFPADMWRKFGDMGLLGITADEEYGGAGLGYLAHVIAMEEISRGSASAALSYGAHSNLCV NQINRNGTPEQKARYLPQLISGEHVGALAMSEPNAGSDVVSMKLRADRRGDRFILNGSKTWITNGPDANTYVIYAKTEPEKGAHGISAFIVERDWHGFSR GNKFDKLGMRGSNTCELFFDDVEVPEENLLGALNGGVKVLMSGLDYERVVLSGGPVGIMQACMDVVLPYIHDRKQFGQSIGEFQLIQGKVADMYTQLNAS RAYLYAVAQACERGETTRKDAAGVILYAAERATQMALDTIQILGGNGYINEFPAGRLLRDAKLYEIGAGTSEIRRMLIGRELFNETR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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