Pseudomonas lutea DSM 17257, LT42_RS04310
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lutea strain DSM 17257 Contig001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCTACATTCATCCGCTGACCATCCTGTCCACGCTGCCCTCGGCGGGCGTGGGCGCGCTGCTGAGCATCTACCTCACCGGCGGTCAATTCAGTCTTATTT CCCTGCTGGGGCTGTTTTTGCTCATCGGTGTGGTGAAGAAAAACGCCATTCTGATGATCGATCTTGCATTGCAGCTTGAGCGCCAGGGCGGCATGACGCC GGTGGAATCCATTCGTAACGCATGCCTGCAGCGCTTGCGGCCTATTCTGATGACCACCCTGGCGGCGATTCTCGGTGCCGTGCCGTTGCTGCTCAGCAGC GCCGAAGGCGCCGAAATGCGCCGGCCGCTGGGCCTGACCATTATCGGCGGGCTGATCCTCAGCCAGATCCTGACGCTGTACACCACGCCGGTGGTTTACC TTTATCTTGACCGTCTGCGCCATCGCTTCAACGCATGGCGAGGTGTGCAGACGGATGCCGCTCTGGAAACTCCGCTATGAATAACCCGATGATTGCGCCC
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| DNA Sequence for Gene |
>LT42_RS04310
GTGCCCGCGTCCAGACGCACACAGCCGTTTGCCCGAACGTTCAGCGTCGCGCTGTGCGCGCTGCTGCTCGGCGCCTGTGCGGTGGGGCCCGATTACAAGA CCCCGGACATGCCCACCCCCGCGCACTTCAAGCAGGCCGAGGGCTGGACCCAGGCCAACCCGAGTGATGCGATCGAGCGCGGCGCGTGGTGGGAGGTCTA TGGCGATGCGCAGCTCAATGGTCTGGTGGAGAAACTCAACACCTCCAACCAGACGGTGGCGCAGTACGAAGCCCAGTACCGTCAGGCCGCTGCGTTGGTG CGCAGCGCGCGCGGGGCGTTTTTCCCGACCCTGGACCTGACCACCAGCAAGAACCGTTCAAGCCAGGGCACCGGCAGCAGCAGTTCGAGCCTGAGCAGTT CCAGCAGCGGCATTCGCGACACTTACAACGCGCAGTTGGGCGTGAGCTGGGAAGCCGACATATGGGGCAAGTTGCGCCGAGGGCTCGAAGCCGACAAAGC CAGCGCCCAGGCCAGCCTCGCCGATCTGGCGTCGATGCGCCTGAGCCTGCAGTCCCAGCTGGTGCAGAACTACCTGCAGCTGCGCGTGATCGACGAGCAA AAACGCCTGCTCGAAGCGACGGTCGATGCTTACCAGCGATCGCTGACCATGACCCAGAATCAATACCGAGCCGGTATCTCGGGGCGCGACGCCATCGCCC AGGCGCAGACCCAACTCAAAAGCACCCAGGCCGACCTCATCGACCTGCAGTGGCAACGCGCGCAGTTCGAGAGTGCAATCGCCGTGCTGATGGGCCAGGC ACCCGCTGATTTCAGCCTGGCAGCCACGACGTCGGTGCCGGCACTGCCGCAGATTCCGGCGCAGTTGCCCTCGCAATTGCTGGAGCGTCGTCCGGACATC GCTGCCGCCGAGCGCTCGGTCATGACAGCCAACGCCAACATCGGCGTAGCAAAGGCCGCGTATTACCCGGACCTGACCCTGAGCATGAGCGGCGGCTACA GCAGCAGCACGGTCAGCAACTGGATTTCCTTGCCCAACCGCTTCTGGTCGGTCGGCCCGCAGCTGGCGATGACCCTGTTCGATGGCGGCCAGCGTGCCGC CGAAGTTGACCGCACCGAGGCGGTTTACGATCAGACCGTCGCCCAGTATCGCCAGACGGTGCTCGACGGCTTCAAGGAAGTCGAAGACTACATGGCGCAA CTGCGCGTTTATGAGCAGGAAGCCGGCGTGCGCGAAGAAGCGCTGCAGTCCGCGCGGGACTCACTGCGTCTGACCAGCAACCAGTACAAGGCCGGTCTGA TCGGCTATCTGGACGTGGTCAACGTGCAGGCCACCGCCTTGAGCAACGAACGCAGCGTGCTCAATGTGCTGGAAAGTCGACTGGTGGCCAGTGCCCAATT GATCGCCGCGCTGGGTGGCGGCTGGAACGCAGCGACCGGGCTGACGCCAGCGCCGGAGGTCACGGGGCGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGGCGACAAATAGCGAAGTGCCATCTTTGCGACGGAGTGACGGGACATTTGCGCCCAGTCCGGTACAATCCCCGGCACTTTGATAAGGGCTGAAAGGCC ACACTCCGTCGAGCCAAGAGCCAGCCCATGTTGATTGGTCATTACACAGTGTCGCTGGTGCTGATATCAGTTCTGGTGGCGATCCTTGCGTCGTACACGA CGCTCGACCTTGCCGGGCGCATCGCCTCGGCGAGCGGTCGGACGCGGGTGATGTGGGTGTGTGGTGGCGGCGTTTCGATGGGCGTGGGCATCTGGTCGAT GCACTTTATCGGCATGCTCGCGTTCAGCCTGCCGATCCCGCTGGCCTATGACGTCGCGCTGACGTCGCTGACGCTGGTCATGGGCATCTTTTCCTCGGGC ATCGCGCTGTGGCTGGTCAGTCACGACCGTGTGCCGATCCTGAATCTTCTCTTCGGCGCGCTGATCATGGGCCTTGGCACCTGCGCCATGCATTACACCG
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| Amino Acid Sequence |
>RND transporter
MPASRRTQPFARTFSVALCALLLGACAVGPDYKTPDMPTPAHFKQAEGWTQANPSDAIERGAWWEVYGDAQLNGLVEKLNTSNQTVAQYEAQYRQAAALV RSARGAFFPTLDLTTSKNRSSQGTGSSSSSLSSSSSGIRDTYNAQLGVSWEADIWGKLRRGLEADKASAQASLADLASMRLSLQSQLVQNYLQLRVIDEQ KRLLEATVDAYQRSLTMTQNQYRAGISGRDAIAQAQTQLKSTQADLIDLQWQRAQFESAIAVLMGQAPADFSLAATTSVPALPQIPAQLPSQLLERRPDI AAAERSVMTANANIGVAKAAYYPDLTLSMSGGYSSSTVSNWISLPNRFWSVGPQLAMTLFDGGQRAAEVDRTEAVYDQTVAQYRQTVLDGFKEVEDYMAQ LRVYEQEAGVREEALQSARDSLRLTSNQYKAGLIGYLDVVNVQATALSNERSVLNVLESRLVASAQLIAALGGGWNAATGLTPAPEVTGR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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