Pseudomonas lutea DSM 17257, LT42_RS02005

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00004
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF17871 AAA lid domain IPR041546 ClpA/ClpB, AAA lid domain 347 440 2.8E-28
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 732 746 8.8E-34
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 670 688 8.8E-34
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 154 347 1.8E-69
Gene3D G3DSA:1.10.1780.10 - IPR036628 Clp, N-terminal domain superfamily 5 153 7.5E-23
SMART SM01086 ClpB_D2_small_2 IPR019489 Clp ATPase, C-terminal 792 876 1.6E-4
Pfam PF07724 AAA domain (Cdc48 subfamily) IPR003959 ATPase, AAA-type, core 621 786 4.8E-42
Pfam PF00004 ATPase family associated with various cellular activities (AAA) IPR003959 ATPase, AAA-type, core 208 338 2.8E-9
SUPERFAMILY SSF81923 Double Clp-N motif IPR036628 Clp, N-terminal domain superfamily 16 143 3.92E-10
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 625 643 8.8E-34
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 348 568 6.8E-43
Coils Coil Coil - - 417 437 -
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 203 349 2.2E-10
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 621 771 3.8E-10
FunFam G3DSA:3.40.50.300:FF:000025 ATP-dependent Clp protease subunit - - 574 790 5.6E-80
NCBIfam TIGR03345 JCVI: type VI secretion system ATPase TssH IPR017729 AAA+ ATPase ClpV1 13 875 0.0
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 570 858 2.63E-57
CDD cd19499 RecA-like_ClpB_Hsp104-like - - 589 790 2.10061E-81
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 166 488 5.66E-67
PANTHER PTHR11638 ATP-DEPENDENT CLP PROTEASE - - 21 874 0.0
Pfam PF10431 C-terminal, D2-small domain, of ClpB protein IPR019489 Clp ATPase, C-terminal 795 865 9.6E-11
CDD cd00009 AAA - - 188 339 4.41907E-15
Gene3D G3DSA:1.10.8.60 - - - 792 885 2.6E-9
PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature IPR001270 ClpA/B family 699 717 8.8E-34
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 574 790 1.8E-65
FunFam G3DSA:3.40.50.300:FF:000010 Chaperone clpB 1, putative - - 153 347 2.2E-84

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.