Pseudomonas lutea DSM 17257, LT42_RS02000
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lutea strain DSM 17257 Contig001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ATGTGCACCAACCAGAACCTGCCGCGCAGACTCAAGCTGGGTGACATTTGCATTCCCTGCGAACAGACGCCGGAGTTTCTGACTTTTCGCAACATCACGC CGGCGACCCAGAGTTACGCGCCGCCGCTGAATCAGGACTTCTTGTGGAAGCTGATCAGCAACATGTCGCTCAACTACCTGTCGCTGGCCGACGTCGACGC GTTGAAAGTGATACTCGAAACCTACGACCTGCCGCGCTATTACGACCCGCACGCAGAAAAGGTCAGCAAGCGGTTGCTTGGCGGCCTCAAGGCAATCAAG CACCAGCACGTCGACAGGTTGTACAGGGGGCTGCCCGTACGTGGTTTGCGCACTGAGCTGACCATCGACCCACAGGGCTACATCGGAGAGGGTGATCTGT TCGTATTCGGCTCGGTGCTGAATGAGTTCTTCGCGCTTTACGCCAGCCTCAATTCGTATCACGAACTGCGGGTGATCAGCATACCGGGACAGGTATACCA
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| DNA Sequence for Gene |
>LT42_RS02000
ATGGACGTCCCGTATGGGCCAGCAGCCCCTGCTATGAACGAATTGAGCCAGGGCATCCGCGAATATTCGCTGTTCCAGGCGGTTCTGCTGGTCCTCGACC GGCTACGCGTTGAGCACCCGCACCTGAGTGATGACGACCTGTACGACCAACTCGAATTTCAGGCCAACCCGAGCCTTGGTTTTCCCGGAAGCGACGTGGA TCGCGTGGAGTTTTTTGAGGAATCAGGGCTGACCCGAGCACGCCTGCGTTTCAACCTGCCAGGGTTGGTCGGCTCCGCCTCGCCCTTGCCTGCGTTCTAC AGCGAACAAGCCTTGGGCGACAGCGAAGAGGGCAACCCGACCCGGCAGTTTCTCGACCTCTTTCACCATCGACTGCATCGGCTGATGTTGCCGATCTGGA AGAAGTATCGCTACCACGCCCGCTTTGAACGCGGCGCGACCGACCCGTTTTCATCGCAACTCTTCGCCCTCATCGGTTTGGGCAGCGAGCAAATACGAAG CGACCGCGAGCTGAATTGGAAGCGCCTGCTGCCTTATCTGGGTTTGCTCAGCCTCAGAGCTCACTCGGCGGCGCTGATCGAATCGGTCCTGCGTTACTAC TTCAAGCACGGCGGGGTGACGATCGAGCAATGCATCGAGCGCAGCGTGGAAGTCCTCGTTGAGCAACGCAACGGCCTGGGGCGGGCCAACAGCAACCTCG GCGAAGACCTGGTCCTGGGCAACCGGGTGCGTGATCGCAGCGGCAAGTTTCGCATACACATTCGCGAACTTGGCTGGGGGCGATTCCATGAGTTTCTTCC GATCGGGGCGAGCTACCGGCCGCTGTGCGCACTGGTTCAATTCACGCTGCGCGACCCCATGGACTACGACGTACGCCTGGTGCTGCGACAGGAAGAAATC CGTGAGTTACGCCTCGCTGAGCAGAACACCTGTCGTCTGGGGTGGACCAGTTGGCTGGGCCGCGATTACGCGGACGGTGTAGTGACGCTGAGCAGTAAAA CATTAAGGACGGCCGAACGATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATACCCTCAACCTGCAACAACTCATTCAGGCGCTCGACGCCCAAAGCCGTCGCGATCTGGAACACGCGGCCGAACGCTGTGTATCGCGCGGCGGCAGCAA AGTCCTCATTGAGGACCTGTTGCTGGGCCTGATGGACCGACCGCACGGCCTGCTTGTTCGCGCCCTGCAGGATGCCGGCCTGGACGCGGCCGAGTTCAGC GCAACGCTGCACCTGAAGACTGAAAACAGCGCGTCGCGCAATCCGGTATTCGCGCCTGAGTTGATGCAGTGGCTGCAGGATGCATTGCTGGTGGCCAACC TTGATCTGGGACAGACCCACGTCGGGGAGGCAGCACTGATCCTCTCGCTGATGCGCAACCCCTTGCGCTACGCGGGCACTCGCTATCAGGCGTTGCTTGC CAGGCTCGACACCGAGCGCTTGAAAGCCTTCGCGCTCTCTCGCAATGCCGATGCCGACAATCAAAAGCAGGCCGTTGGCGCGGAATCGCTACTGACTCGC
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| Amino Acid Sequence |
>type VI secretion protein
MDVPYGPAAPAMNELSQGIREYSLFQAVLLVLDRLRVEHPHLSDDDLYDQLEFQANPSLGFPGSDVDRVEFFEESGLTRARLRFNLPGLVGSASPLPAFY SEQALGDSEEGNPTRQFLDLFHHRLHRLMLPIWKKYRYHARFERGATDPFSSQLFALIGLGSEQIRSDRELNWKRLLPYLGLLSLRAHSAALIESVLRYY FKHGGVTIEQCIERSVEVLVEQRNGLGRANSNLGEDLVLGNRVRDRSGKFRIHIRELGWGRFHEFLPIGASYRPLCALVQFTLRDPMDYDVRLVLRQEEI RELRLAEQNTCRLGWTSWLGRDYADGVVTLSSKTLRTAER
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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