Pseudomonas lutea DSM 17257, LT42_RS01975
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas lutea strain DSM 17257 Contig001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGCTAACCAAATTTGGCCATTAACTCCTTATTTAAATGCGCAACAACAATGTCGCCCTCTAAAGAGGTTATTCAAAAGGGTGCATATGCGCAGTTAGTCA CCCGGCACTGCGCAATATCCTGCGCACTCACTCAAGAGCACTGCCGCATAAGTCGTTCGCGCCGATGCGTCGTCTTCTCACCGCTCTTCGTAGGGCAGGT TGCTGCGCATACCGGCCTTATGGTGGCAGCCTCGGCCGCGTATGGTGTCATGGGTGATTCTTTGGGTTAAGTGCTGGAGGTTATGAGTGGCCGACAAGAA ACTTGGAGAAATTTCCTACACTAATTGTCTGCTAGCCTCGCTTATCTAGCACTTGATAGTGTTAGTTGTGCTCCGTAGTATCTGCGGCCTCTGCCCTGTA GACGTTTTGTTACACCTTGCCGAATAAATAACGTATCTGTTTTGTTCTGTCCAAACGGCAGAGCACTGCCTTCCATATCCTCATGTTTAGTTGAATGTAT
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| DNA Sequence for Gene |
>LT42_RS01975
ATGCCTCACTCATGCGCACTTTCCGCACATTGTCTGGAACTCGCCAAGGTCTCTATATCCAAAGAGAACTTCGCGGGTAAGGACGTTCGTTATTCGAGCG AATACGAGTCGCTGGAGAGTGAGCTGAGTAAAGCGCAATCCATGCATGACGGCGGACAGGTCGACTGGCTGAAGGTCCGTGAGCAAAGCGAAATACTCCT CGCCACCCAGTCCAAGGATCTGCGCATCGGTGCGTGGTTGACATGGGCGCTGTACCAGCGTGAATCCTTTCCCGGGCTAGTGGCGGGACTAGGACTCATC CATGAGCTTTGCGCCAATCATTGGTCCGACATTTATCCTGTAAAGCAGCGCACCCGATGCGCCGCGATCCATTGGCTCGTCCCCCGTATCGAGCGGGTGC TCGACGACAACGCCGTCCTCAATGAGCAGCCTGCCTTGGGCGATCGCCTCATTGCAGTGCTGGAAAACCTCGATCAGGTGTTTGCCCGGCATCTGGATGC TGACGCTCCGCCTCTTTTGCCCATCTGCAGACGGATACGAAGCCTCGTTCAGCCCGCAGCCGACACGCTGCCGCAAGCCCAGGGCGCCACTCCCGTACAG CCCCAGCAAAGCGCTACGCCGAAAGCTGCCCCGGTCTCGATGATCCAAAGTGAGAAAGATGCCCATAAATGCCTGCGTCAATTGCAGGAGAGCGCACGCC CTTTATGCGACTGGTGGCTCAATCAGAAAGTCGGCGACGTGCGCGCGTTGCGCCTCAATCGCAGCTTGCCCTGGCTGCTCATCGAATCGATGCCCGAGAG CAACACGGAGCAGATCACCGCGCTGCGCGGGCTCCCGGCCGACAGGCTCAAGACTTATCAGGACAAGTACGAGCACCGGCGCTACGCCGATCTGCTTGTC GAACTCGAAGCAAGTCTGGCCAAGGCACCGTTCTGGTTCGACGGTCAACGAATGGTCTGGGAGTGCCTGCAAGGCGTGCATGCCGACGTGGCAATGCGTG AGGTCGAACTCCACTTTGCGTTGTTTCTTCAGCGCCTGCCGGGCGTCACCGAGCTGCGATTTCACGACGGCGTGCCGTTTGCAGACGCTGCGACCAAAGC CTGGATCTCCGGCAGTGTCATGCCTCGCCTGCAGTGCGCCGTTGCGCCCCCCTCCGTTGAGGCTGCCGGTGCGCAGCTTCCATGGGAGTGTGCGCTGAGC GATGCGCTGTCGGTGTTGAGCCAGGACGGGCTCAAGACTGCAGTACGGATTCTCAAGCACGGGATGCGCAGCGCCCATGGCAAGCGGGCGCGCTTTTTCT GGCAGCTCTCTCTCGCGCGGCTGTGCTTCACGGCCAGGCGATATGAACTGGCCAAAACCCAACTCGAAACCCTTGACCAGACACTGGAGCAGTCAGGCCT CGATGCCTGGGAGCCCGATCTCGCGCTGCAAGTTCTGCAGTTATTGCACAGCTGCCTTGCGTTGTTGCCTCTCAACCAAGGCGTGCGTGATCACAAGGAC CAGGTTTATCGCAGGCTGTGCCACCTCGATTTGGAAGTGGCACTTGAACAGGCCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGGCCCTAATCGCTAGGAGAGACACCATGGCCAAAGAAGGCTCGGTAGCCCCGAAGGAACGTATCAACGTCACATTCAAGCCGGCCACTGGCGGTGCGCA GGAAGAGATCGAACTGCCGCTCAAGCTGCTCGCGATTGGCGATTACACCCTGCGCAAGGACGACCGCAAGCTGGAAGAGCGAAAGCCTATCAGCATCGAC AAAATAACCTTTGATGACGTGCTCGCCAAGCAAGCCTTGAGCCTGACGCTGAGCGTCCCCAATCGCCTGCAGGAAGCGAAAGACGGTGAGGAGCTTGGCG TGGAGTTGAAGGTGAACACGATGAAGGATTTCAACCCGGCCTCACTGGTGGATCAGGTGCCGGAACTGCGCAAGTTGATGGAGCTGCGCGACGCCCTGGT AGCGCTCAAGGGGCCGCTGGGCAATGCACCTGCGTTCCGCAAAGCCATTGAAGGCGTCCTCGCCGACGATGAGTCCCGAGGGCGAGTGCTGGGTGAATTG
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| Amino Acid Sequence |
>type VI secretion protein ImpA
MPHSCALSAHCLELAKVSISKENFAGKDVRYSSEYESLESELSKAQSMHDGGQVDWLKVREQSEILLATQSKDLRIGAWLTWALYQRESFPGLVAGLGLI HELCANHWSDIYPVKQRTRCAAIHWLVPRIERVLDDNAVLNEQPALGDRLIAVLENLDQVFARHLDADAPPLLPICRRIRSLVQPAADTLPQAQGATPVQ PQQSATPKAAPVSMIQSEKDAHKCLRQLQESARPLCDWWLNQKVGDVRALRLNRSLPWLLIESMPESNTEQITALRGLPADRLKTYQDKYEHRRYADLLV ELEASLAKAPFWFDGQRMVWECLQGVHADVAMREVELHFALFLQRLPGVTELRFHDGVPFADAATKAWISGSVMPRLQCAVAPPSVEAAGAQLPWECALS DALSVLSQDGLKTAVRILKHGMRSAHGKRARFFWQLSLARLCFTARRYELAKTQLETLDQTLEQSGLDAWEPDLALQVLQLLHSCLALLPLNQGVRDHKD QVYRRLCHLDLEVALEQA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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