Pseudomonas lutea DSM 17257, LT42_RS01020

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0030288 outer membrane-bounded periplasmic space
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006470
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF006470
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.40.190.170 - IPR038404 TRAP transporter solute receptor DctP superfamily 26 330 3.5E-90
CDD cd13674 PBP2_TRAP_SBP_like_1 - - 27 325 0.0
Coils Coil Coil - - 269 289 -
NCBIfam TIGR00787 JCVI: DctP family TRAP transporter solute-binding subunit IPR004682 TRAP transporter solute receptor, DctP family 30 277 1.2E-70
Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 IPR018389 TRAP transporter solute receptor DctP 30 315 7.6E-102
PIRSF PIRSF006470 DctB IPR004682 TRAP transporter solute receptor, DctP family 1 331 9.8E-123
FunFam G3DSA:3.40.190.170:FF:000001 TRAP dicarboxylate transporter, DctP subunit - - 25 329 1.5E-121
NCBIfam NF037995 NCBIFAM: TRAP transporter substrate-binding protein DctP - - 29 302 2.3E-49
PANTHER PTHR33376 - IPR018389 TRAP transporter solute receptor DctP 4 328 3.2E-122

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.