Pseudomonas mendocina EGD-AQ5, O203_RS43925
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina EGD-AQ5 contig5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGGAGCACAGCCTGGCCGCCTACAGCGACATGCCGGGGCTGATCGTGCTGCGCTCGTTCGGCAAGTTCTTCGGTCTGGCCGGTTTGCGTCTGGGCTTCG TCCTGGCCGCCCAGACGCTGCTGGATGAGCTGGAAACGCTGCTCGGGCCCTGGGCCGTCAGTGGCCCGGCGCGCAGCGTGGCGCGCAGCCTGCTGGTCGA TGGCGAGGGGCAGCGCCGCCAGCGTGAGCGCCTGCTGGCTGACGGCGAGCGCCTCAAGGCGCTGCTGCGTGACTGTGGCTTGCCGTCGACCGGTGGCTCG TCGCTGTTCCAGTTCTGCTGCACCCGTCGCGCCGTGCCCTGCGTCGAGCTGCTGGCGCGGCGGGGCATCCTGGTGCGCCTGTTCGCCGAGCTGGACAGCC TGCGCTTCGGCCTGCCGGCGGACGAGGCAGGCTGGCTGCGGCTGGAGCAGGGTCTGTTGGAATGCGCGCCGATATTGGCCAGTCTCGAGGAAACGCCCTG
|
|
| DNA Sequence for Gene |
>O203_RS43925
ATGGCCACCCTGATGGTGCAGGGCACCACTTCCGATGCCGGCAAGAGCACACTGGTGACGGCGCTGTGTCGCTGGGTACGGCGCCAGGGCGTGTCCGTGG CGCCTTTCAAGCCGCAGAACATGGCGCTCAATTCCGCCGTGACCTCTGACGGCGGTGAGATCGGCCGGGCGCAGGCGGTACAGGCGCAAGCGGCCGGCCT GGCGCCGCATACCGACATGAACCCGGTGCTGCTCAAGCCCAACAGCGACATGGGCGCCCAGGTGATCATTCACGGCCGTGCCATCGGCAACATGCAGGCG CTGACCTATCACGGCTACAAGCCGGTGGCCATGGCGGCTGTGCTGGAGTCACACGCCCGCTTGCTCGCGCGTCATCAACTGGTGCTGGTCGAGGGCGCAG GCTCGCCGGCCGAGATCAACCTGCGCGCCGGCGACATCGCCAACATGGGCTTTGCCGAGGCGGTGGATTGCCCGGTAATTCTGATTGCCGACATCGACAA GGGCGGCGTGTTCGCCCATCTGGTCGGTACCCTGGAGCTGCTCAGCCCGAGCGAACAGGCGCGCATCCGCGGTTTCGTGATCAATCGCTTTCGCGGTGAT ATCGCGTTGCTCAAGCCGGGGCTGGACTGGTTGCAGCAGCGCACCGGCAAGCCCGTGCTCGGCGTACTGCCGTATCTGATGGATTTCCACCTGGAAGCCG AGGACGCCGTCGATACCCGTCAGCAGGCCAAGGACGCGCAGGCGCTGCGCGTGGTGGTGCCGGTGTTGCCGCGTATCAGCAACCACACCGATTTCGACCC GCTAAGGCTGCACCCGCAGGTGCAATTGACCTTCGTCGGGCCGGGCCAGGCGATACCGCCGAGCGACCTGATCATCCTGCCTGGCTCCAAGAGTGTGCGC GCCGATCTCGCACGGCTGCGCGAGCAGGGCTGGGACGCCGCCATCGCCCGCCACCTGCGCTACGGCGGCAAGGTTCTGGGCATTTGTGGTGGCCTGCAGA TGCTCGGCCGGCAGATTCACGACCCGCACGGCCTGGAAAGCGCTGCCGGCAGCAGCGAGGGCCTCGGCCTGCTGGATTTCGAGACGCTGCTTGAGCCAGA GAAGCAGCTGCGCAACGTCCGCGGCCGGCTGTGCCTGGAACAGGCTGATGTCAGCGGCTACGAGATTCATGCCGGCGTCAGTCGTGGTCCGGGCCTCAAC GGCGCCGTGCACCTTGACGACGGTCGCAGCGATGGCGGTCTCAGCGCCGATGGTCAGGTGCTCGGCACCTACCTGCACGGCCTGTTCGAGCAACCCTCGG CGCTTGCCGCACTGTTGCGCTGGGCCGGGCTGCAGGAGGTGCAGACGGTGGACTACCAGGCGTTGCGCGAGCGCGATATCGAACGCCTGGCGGACCAGGT GGAACTGCATCTGGATACCGAAAAACTCAGAGCGCTTTGCGGCCTGTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GAGCGAGCTCTGCTCGCGAGGTTTTTATGTACCGCACGGTTCGCGAGCAGAGCTCGCTTCCGCAGGGCTGAATGAATGTGGATGGAAGCATGCTTGAATT GATCCTCGGCGGTGCCCGTTCCGGCAAGAGCCGGCTGGCGGAGAAGCTGGCCGACGAGTCCGGGTTGGAAGTTGTTTACATCGCCACCAGCCAGCCGCTC GATGGCGAGATGAATGCGCGCGTCGCTCAGCATCGCGCGCGTCGCCCGGCGCACTGGGCGCTGGTCGAGGAGCCGCTGGCGCTGGCCCATGTGCTGGGCG AACAGGCCGCGCCCGGCCGTTGCCTGCTGGTGGACTGCCTGACCCTGTGGCTGACCAACCTGCTGATGCAGGACGATCCGGCTCGGCTGGCAGCCGAACG CGATGCGCTGCTCGGCTGCGTGGATGGGCTGCCCGGGCGCATCCTGCTGGTCAGTAACGAAACCGGGCTGGGTGTGGTGCCGCTGGGCGAGCTCACCCGC
|
|
| Amino Acid Sequence |
>cobyric acid synthase
MATLMVQGTTSDAGKSTLVTALCRWVRRQGVSVAPFKPQNMALNSAVTSDGGEIGRAQAVQAQAAGLAPHTDMNPVLLKPNSDMGAQVIIHGRAIGNMQA LTYHGYKPVAMAAVLESHARLLARHQLVLVEGAGSPAEINLRAGDIANMGFAEAVDCPVILIADIDKGGVFAHLVGTLELLSPSEQARIRGFVINRFRGD IALLKPGLDWLQQRTGKPVLGVLPYLMDFHLEAEDAVDTRQQAKDAQALRVVVPVLPRISNHTDFDPLRLHPQVQLTFVGPGQAIPPSDLIILPGSKSVR ADLARLREQGWDAAIARHLRYGGKVLGICGGLQMLGRQIHDPHGLESAAGSSEGLGLLDFETLLEPEKQLRNVRGRLCLEQADVSGYEIHAGVSRGPGLN GAVHLDDGRSDGGLSADGQVLGTYLHGLFEQPSALAALLRWAGLQEVQTVDYQALRERDIERLADQVELHLDTEKLRALCGL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|