Pseudomonas mendocina EGD-AQ5, O203_RS41340
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina EGD-AQ5 contig4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTCGGAAGTGATCTCCGCTGGCGTCATCGATGATCAGGTGCAGAGTCAGGCGGTGACCAAGCATGTGCTGATCGTCGATGACTCTTCGGTGGCGCGTAAA CAGGTTTCGCGCTGCCTGCAGACCGTTGGTGTCGAGGTGACGGCGCTGAACGATGGCCGCGAGGCACTCAATTACCTCAAGAAAATGGCGGACGAGGGGC ATAATCCCGACAAGGAACTGCTGATGCTGATTTCCGACATCGAGATGCCCGAGATGGACGGATATACGCTGACTACGGAGATTCGTAGCGATCCGCGCAT GCAGAAGCTGCATATCCTCCTGCATACTTCGCTTTCCGGTGTGTTCAACCAGGCGATGGTGAAGAAGGTCGGCGCTGACGACTTCCTCGCCAAGTTCAAG CCAGATGATCTGGCGGCGCGTGTGGTCGATCGCATTCGTGTATCGGATGGGGGCTGAAGGGTGACCTTCGGCGAACGTTATGGTTGTAGAGGCGGCACTA
|
|
| DNA Sequence for Gene |
>O203_RS41340
GTGTCTTCAGGTAATTTGGATTTCGAGCAGTTCCGGACTTTCCTGGAAAAGGCCTGCGGTATTCTGCTTGGCAGCAACAAGCAGTACCTGGTCTCCAGCC GTCTGAACAAGCTGATGGAACAGAATGGCATCAAGACCCTGGGCGAGCTGGTGCAGCGCATGCAGAGCCAGCCGCGTAGTGGCCTGCGCGAGCAGGTGGT CGATGCCATGACCACCAACGAGACCCTGTGGTTTCGTGACACTTATCCCTTCGAGGTGCTCAAGAACCGTGTGTTGCCGGAGTTGATCAAGGCTTACCCG GCCCAGCGCCTGCGTATCTGGTCGGCGGCTTGTTCGTCCGGCCAGGAGCCTTACTCGCTGTCGATGTCCATCGATGAGTTCGAGCGCACCAACCTCGGTC AGCTCAAGGCAGGTGTGCAGATCGTTGCCACCGACCTTTCGCCGTCGATGCTGACCAATTGCAAATCCGGCGAGTACGACAGCCTTGCCATGGGGCGAGG CCTTTCGCAGGAGCGTTTGCAGCGCTACTTCGACCCCAAGGGACCAGGACGTTGGCAGGTCAAGGCGCCGATCAAGAGCCGTGTCGAGTTTCGCCCACTG AATTTGCTGGATAGCTACGCGGCATTGGGCAAATTCGACATCGTCTTCTGCCGCAACGTGCTGATCTACTTCTCGGCAGAAGTGAAGAAGGACATCCTCA CGCGCATTCACGCCACGTTGAAACCGGGCGGTTATCTGTTCCTCGGCGCCTCCGAAGCGCTCAATGGCCTGCCGGACAAGTACCAGATGGTGCAGTGCAG TCCTGGGATCATCTACAAGGCCAAATAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCACAAGGCATGTTTGGTATCAGCAACGGGAGGCCTTTGGCCTCCCGTTTACGTTTCTGTGCTCTGAAAACCATGTCCCCCGGCTGAACACATCGCGCAC CCCAGGGGTCGGCGGGGCGGCAATCTGTCCGGTTGGCTTTGCCGCTTGCTTGCCCGTAGGCGGTAAAGCCTTGCCGCTTTGCCGTTATTTTTCCGCTTGA TTGCTATTAACGTATTGATTTTATTGAATTAAATAAATTGGCACAGCCTTTGCTGAATAGCTCGCAACAGTGACCACATGGCCCAAGCGGCAAAGGTTCG GAACATGAGCATCAACTTCGGCAGAGCACTCGGTATTCACGAACAGGCCCTCGGCTTTCGCGCCCAGCGCGCCGAGGTGCTGGCCAACAATATCGCCAAC GCCGATACGCCGAACTACAAGGCTCGCGATCTGGACTTCGCCAGCGTCCTGGCCGAGCAAAGCAATCGCATGCAGCGCGGTGGCGTTTCCCTGAACCGCA
|
|
| Amino Acid Sequence |
>chemotaxis protein CheR
MSSGNLDFEQFRTFLEKACGILLGSNKQYLVSSRLNKLMEQNGIKTLGELVQRMQSQPRSGLREQVVDAMTTNETLWFRDTYPFEVLKNRVLPELIKAYP AQRLRIWSAACSSGQEPYSLSMSIDEFERTNLGQLKAGVQIVATDLSPSMLTNCKSGEYDSLAMGRGLSQERLQRYFDPKGPGRWQVKAPIKSRVEFRPL NLLDSYAALGKFDIVFCRNVLIYFSAEVKKDILTRIHATLKPGGYLFLGASEALNGLPDKYQMVQCSPGIIYKAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|