Pseudomonas mendocina EGD-AQ5, O203_RS40765
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina EGD-AQ5 contig3, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCCTGGGTACGTTCGATGCCATCGAGCTGCTTCTGATAACTGGCCAGTTCCTGACGCTGGGCTTCGACCAGGTCACGAAGTTGACTGTTATAACCTTTCA AAGCCTCAGCCTGCTGCAGGGCATTTCGGTACTCATTGAGCATCTCACGGCTGGCGTCATCCAGCTGTTCGACACGGCCCTGGGAGGCTTTCGCCTCGGC GGCCAGGCGCTGGCTTTCGTCGAGCGCAGCATCCAGCGGCGCGGCAAGCAGCGGGCCGCTGCTCAGCATCAGTGCCACGGCCAGGGAACGGAGGGGGAAG CGATTCATGCGCAGAGGGTCCTCGACAGACGGGCTTGCTTCAAAAAGAGAAACATTATCATCTACAGACGCATTCGAAGCAATGGACAAAACACCGCAAC AGAGCTCGCCGATCTATTGAGCCAGGTCAAAAAGTGGATTGTTGCTTGGCTTAGCATTGATTCCAGCCAAAGACACAACCGACTCGAACTGGAGCTCGCC
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| DNA Sequence for Gene |
>O203_RS40765
ATGTACAAATCACTGTTCACTGCCTCGCTGCTGGCCCTCGCCATCGCTGCCCCTGTTGCCCAGGCCCACCAGGCCGGCGATATCCTCATCCGTGCCGGCG CCATCACCGTCAACCCGGAGGCCGATTCCTCCAGCGTCAAGGTTGATCGCGGCGGCCTCGCCGGCACCGACCTGGGCGGCAAAGCGACCATGAGCAGTGA CACCCAGCTGGGCCTGAACTTCGCCTACATGCTCACCGACAATCTGGGCATCGAATTGCTGGCGGCAACGCCGTTCGAGCACGACGTGAAGATCAAGGGC ACCGTCCTCGATGCAGCCAATGGCAAGCTGGGCAGCCTCAAGCACCTGCCGCCGACCCTGAGCCTGGTGTATTACCCGCTGGACGCCAAGTCAGCCTTCC AGCCCTATGTCGGCGCCGGTATCAACTACACCTGGATTTTCGACGAGCACGTCGGCAGCGCCGCCAGCGCCAACGGCTTCGACAATTTCCGTGCGAAGAA CTCCTGGGGCCTGGCCTGGCAGGTGGGCGCCGACTACATGCTGACCGATAGCCTGATGCTCAACGCCCAGGTGCGCTACATCGACATCGACACCACCGCC TATGTCGACAACACCGCCCTCGGTGTGCGGGCCAAGGTTGACGTGGACGTAGACCCTTTCATCTACATGGTCGGCCTGGGTTACAAGTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TAACCCTCGCAGAAACGAAAAAGCCGGCGTATGCCGGCTTTTTCATGAGCTCGATTCACACACCGAGCAGCTGGCGCAAGCCTTCACGCAGCGGCGTCTG CTCTGGCATGTGGTAATGAGCCTGCAAGCGCGCATTGTCAGCACGCGAATGGCGAATATCGCCAGCACGGGCCGGCAAGTGCGTCACCGGCGGCAGGCCG CCGCACAGCACGCCGATCTCAGCCAGCAGTTGGTTGAGACTTACCGCCTGGCTCCAACCCACATTGAGCGGATCACTCACCACCTGCTCGCTGAGCAAGC CCTGCATCAACAGCGCGACCAGATCACCGACATAGAAGAAATCACGGGTCTGCTCACCATCACCGAAGACGCTGATCGGCAGCCCCTGCTGCGCACGTTG GGTGAAGATACTGATCACCCCGGAGTACGGCGAGGATGGATCCTGGCGCGGCCCGAAGATATTGAAGAAACGAAACACCGCCGGTTCCAGGCCATGCTGA
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| Amino Acid Sequence |
>outer membrane protein W
MYKSLFTASLLALAIAAPVAQAHQAGDILIRAGAITVNPEADSSSVKVDRGGLAGTDLGGKATMSSDTQLGLNFAYMLTDNLGIELLAATPFEHDVKIKG TVLDAANGKLGSLKHLPPTLSLVYYPLDAKSAFQPYVGAGINYTWIFDEHVGSAASANGFDNFRAKNSWGLAWQVGADYMLTDSLMLNAQVRYIDIDTTA YVDNTALGVRAKVDVDVDPFIYMVGLGYKF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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