Pseudomonas mendocina EGD-AQ5, O203_RS37870
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina EGD-AQ5 contig2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GAAGGGCGATACAGCTCTACATCTATTCGGAAGAGAATCCATGGCCATTTGACCACCTGCACATCCCAACGCTGGCAAACATCAGAGCCGCGGTCGAGTC AGCTGTATCGAATGCCGCAGCGACCGCCATCAACAAGGCCACCACGAATTCGACCTTGCTGCCCTATCTGCAAGGAAACCGGCCCGCGAGCTTCCTGACA GTCGTAACCCAAAGCCAGACCAGCAGCCGTTTGTACGGGAGCCAGGGAAACGGATTTGCCGAAATCAATACCATCGAAATGAAGGTGCGTTGGCTGAACG GAAAACTGGTAACCGACAATCACCTTGTCAAAGCCTTGTACGGTTTCAAGGTCCGGGCGCACCTCAATACCCCAACCAGCATCCAGTCCAGTTCCACCAA GGTCTACTGGGAAAACGATGAATATTGAAACCCTTGGCGTTGGAAGCAGTCGATGCTGTCGAAGATCGGGCGGCTCATCGTTACATGAACGGAATTGCCA
|
|
| DNA Sequence for Gene |
>O203_RS37870
ATGACACGCGCCATCGATATCACCACCAGCCTCTCCCTCACGGCGCCGGCATTGGCAGAACTCTATCCGCAAAGTTTTTCCGGGCAGGAGATGCTGAACG ACCTCGCTCAACTCAACCTAATGGGCTTCAGCACCAGCGCGCTTTCGCTATCGGGCGCCGTGGCCACACATCTCACCGCCACCTTGCACAACGACGCCAG CCAGCGCCCCCTCGATGCCCTGGTCGCGGAGATTCGCCAGCTCCCCGCCGACGCCACGGCCGACCGCTACCAGGTGGTGCTGCGCCCCTGGCTCTGGTGG CTGACGCTGGCCAGCAACAACCGGGTGTTCCAGAATCTCGCCACCAGCGACATCGTTATCACCATTTTCAAGGCCCATGGTTTTACCGACTTCAAGCTGT CGCTCTCCGGCAGCTACGAGCCGCGCGAGTATTGCGTGCAGTATGGCGAGACGGACTTCGCCTTCGTTTCGCGCTTGCTGGAGGAGGAAGGCATCTTCTG GTTCTTCACCCACGAAGACGGCAAGCACACGCTGGTGCTGGGCGACAGCAGTGATGCCTTCGTGCCGATCCCCAACGGGCCGAAGGTGCCCTACCTGGGC CAGGGCATCGGCGTGCGTGAGCTGCATGGCATCCGCTCGGCGCAGTACAGCGTGCAGGCAGTGAGCGGGGTGTACAGCGCCACGGACTACGCCTTCACCA CCCCCACTACCTCGCTCTACAGCCAGGCCGAGGCGGTGGCCGGGCCGTTGTCGATGTATGACCACCCGGGCGGCTATATCGCCAAGGCGCGGGGCGATGC CTTGACCAAGCAGCGCGTGGACGGGCTGCGCAGCCAGGAGAAGCGCCTGATCGGCGAGAGCGACTGCCGCTGGCTGGTGCCCGGCCACTGGTTCACCCTC ACCGGGCATGACGACGCCAGCCTCAACATCGACTGGGTGGTGGCCTCGGTCACCCATGACGCCAGCCACGAGCACTACCGCAACCGTTTCGAGGCCATCC CCAAGGCCACCGCCTACCGCCCACCCCGGCTCACGCCCAAACCGCGCATGCACACCCAGACCGCGCAAGTGGTGGGCAAATCCGGCGAGGAGATCTGGAC CGACCAGTACGGCCGCATCAAGATCCAGTTCCCCTGGGATCGCGACGGCAAGAACGACGAAACCTCATCCTGCTGGGTGCGCGTGGTGCTGCCCTGGAGC GGCAAGGGCTTCGGCATGCAGTTCATCCCACGCATCGGCCAGGAGGTGATCGTCACCTTCATCGACGGCGACCCGGATCGCCCGCTGGTCACCGGCTGCG TCTATAACGGCGACAACACCCTGCCCTACGCCCTACCGGACAACCAGACCCAATCCGGCATCAAGACCAATTCCTCCAAGGGCGGTGGTGGCTTCAACGA GCTGCGCTTCGAGGACAAGAAGGACGCCGAGGAAGTCTTCCTCCAGGCGCAGAAGGACATGAAGGTCAACGTGCTCAACGACAGCACCGCAACCATCGGC CACGATGAAACCCTCACGGTGCAGAACGCCCGCACCCGCACGGTGAAGGAAGGCGACGAAACCATCACCCTGGAGAAAGGCAAGCGCACCGTGACCATCC AGACCGGCAGCGACACCCTCGATGTAAAGGACAGCCGCACCGTCAGCGTCGGTGCCGACCAGACCCACAGCACTGGCGGCAACTACAGCCACACCGTCAG CGGCAACTACGAGCTGACCGTGGACGGCAACCTCACCATCAAGGTGACCGGCACACTCACCCTGCAGAGCAGCGGCGACCTCACCGCCAAGAGCGACCAG AACCTCACCACCCAGGCCGGCATGGCCCTCACCGACAAGGCCGGCACCTCGCTCACCAACCAGGCCGGCACCTCCCTGGACAACAAGGCCGGCACCACCC TGACCAACGACGCCGGCGTCAGCCTCACCAACAAGGCCGCCGCCGAACAGACCGTGGATGGCGGCGGCATGCTGACCATCAAGGGCGGCTTGGTGAAGGT CAACTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGCGCTCATGGCCAACGGCAATCTCGACCTCACTCGTGGAGACAGCCGCCTCCAGGGCAAGCTGCAGGGCGACGCCCTCGATGGCCCGGTGCGCATCCAG GAAGCCGGTCGCCCGCAGGCCCAGCTCCTCTATGCCAACGGCGTGCTGCACGGCCCCAGCATCCTCTACCACCCCAACGGCCAGGTGTCGGCACAACTGC CCTACGCCGACGGACGCCTGCATGGCGTGGCTCAGTACTTCGCCGCCGAAGGCTGGCTGCAGCGCAAGGTCAGCTACCGCCAGGGGCTGATGCAGGGCGA AGCCAGCAGCTACTACCCGGATGGCAGCCTGGCCGAGCTGGAGGTATATCGCGATGGGGTACGTGACGGCCTCTACCAACGCTTCCATAGCAAAGGCCAG GTGGCCCATCGCAGCCGCTACCTCAACGGCAAAACGCTGGACGAAGGCCAGAGCTTCGCGGAAGACGGCCGCCCGCTGGACGCCGAAGGTAAACCCATCT
|
|
| Amino Acid Sequence |
>type VI secretion protein ImpA
MTRAIDITTSLSLTAPALAELYPQSFSGQEMLNDLAQLNLMGFSTSALSLSGAVATHLTATLHNDASQRPLDALVAEIRQLPADATADRYQVVLRPWLWW LTLASNNRVFQNLATSDIVITIFKAHGFTDFKLSLSGSYEPREYCVQYGETDFAFVSRLLEEEGIFWFFTHEDGKHTLVLGDSSDAFVPIPNGPKVPYLG QGIGVRELHGIRSAQYSVQAVSGVYSATDYAFTTPTTSLYSQAEAVAGPLSMYDHPGGYIAKARGDALTKQRVDGLRSQEKRLIGESDCRWLVPGHWFTL TGHDDASLNIDWVVASVTHDASHEHYRNRFEAIPKATAYRPPRLTPKPRMHTQTAQVVGKSGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWS GKGFGMQFIPRIGQEVIVTFIDGDPDRPLVTGCVYNGDNTLPYALPDNQTQSGIKTNSSKGGGGFNELRFEDKKDAEEVFLQAQKDMKVNVLNDSTATIG HDETLTVQNARTRTVKEGDETITLEKGKRTVTIQTGSDTLDVKDSRTVSVGADQTHSTGGNYSHTVSGNYELTVDGNLTIKVTGTLTLQSSGDLTAKSDQ NLTTQAGMALTDKAGTSLTNQAGTSLDNKAGTTLTNDAGVSLTNKAAAEQTVDGGGMLTIKGGLVKVN
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|