Pseudomonas mendocina EGD-AQ5, O203_RS37830
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina EGD-AQ5 contig2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCTGACCTCTCCGGCAAACCCGAAACACCGTTGCCCAAGCTGATCGACCGCCGCTTCACCGAGATCGACCGCGACAACTTCAACGAAGTACTCGCCTCCA TCGAGCCGCGCAGCACTTTGCAGGTGGAAAACACCATCAGCGGCGACGGCAGCAAGCTCAACGTTGAACTGCGCTTCCGCCACTTCGACGACTTCGACCC AGTCAACATCGTCAATCAAATCACGCCACTGCGCCGGTTGTATGAGGCACGCCAGCGCTTGCGTGACTTACTTACCAAGCTCGACGGCAACGATGACCTC GACAAACTGTTGCAGGACGTAGTGAGCAATACCGAAGGCCTGCAGGAGATCAAGTCCTCACGCCCAGAGAGCGAATCTCCAGCCCAAGCCGCAGCCAACG CCGACGTCGAAGCGCCAGTCGATACCCCTGCTTCCGACGACGGCGAAGCACCGACCGAACCCCAGGCCTGAGCGCCCCTTGAACACCCGGAGATGACGTA
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| DNA Sequence for Gene |
>O203_RS37830
ATGGCCACCAAAGCCGGTGCTTCCAGCGAGAGCACGACCCAGACCCTGACTCTACTCGACCGAATCATTGCCGAGGGCCGAATGGCCCACGACGAAAGCC AGCAGGACTACGCCCGCGACATGCTCGCGGAATTCGCCACTCAGGTGCTTGACGAAGGCATGGCCATCGACAAGGACACCGTGGCCATGATCAACGACCG CATCAGCCAAATCGACAAGCTGATCAGCGACCAACTCAACGAGGTTCTGCACCATCCTGACATGCAGAAGCTGGAGGCCTCCTGGCGAGGCTTGCACATG CTGGTGGACCAAACAGAGACCAGCAGCCGCCTAAAGCTGCGCCTACTCAACGTCACTCAGAAGGAATTGCAGAACGATCTGGAGAAGGCCGTCGAATTCG ACCAGAGCTCGCTGTTCAAGAAGATCTATGAAGAGGAATACGGCACCTTCGGTGGACACCCATTCAGTCTGCTAGTGGGCGACTATGCATTCGGCCGCCA TCCACAAGACGTCGCCCTGCTAGAAAAGCTCTCCAACGTCGCAGCCGCTGCCCACGCGCCATTCATCGCCGCCGCCAACCCTAAATTGTTCGACATGAAC AGCTTCACCGAGCTGGCCGTGCCTCGCGACCTCAGCAAGATCTTCGAGAGCCTGGAGCTGATCAAGTGGCGCAGCTTCCGCGAGAGCGAGGATTCGCGCT ACGTCTCACTCGTGCTGCCGAACTTCCTCCTGCGCCTGCCCTATGGTCCGGACACCAATCCGGTGGAGGGCATGGACTACGTCGAGGACGTCAACGGCAC CGACCACTCCAAGTACCTCTGGGGTAATGCCGCCTGGCTGCTGGCACAGCGCATCACCAGCGCCTTCGCCAAGTATGGCTGGTGCGCGGCTATCCGTGGC GCCGAAGGCGGTGGAGCGGTGGAGGGCCTGCCGGCACACACCTTCCGCACCCTGTCTGGCGACCTGTCGCTGAAGTGCCCGACCGAAGTGGCGATCACCG ATCGCCGCGAGAAGGAACTCAACGACCTCGGTTTCATCTCTCTGTGCCACAAGAAGAACACCGACATGGCAGTGTTCTTCGGCGGTCAGACCACCAACAA GGCCAGGCTCTACAACACCAACGAAGCCAACGCCAACGCCCGCATCTCGGCCATGTTGCCCTATGTGCTGGCAGCATCGCGCTTCGCCCACTACCTGAAG GTGATCATGCGCGACAAGGTGGGCAGCTTCATGACTCGCGACAACGTGCAGACCTACCTCAACAACTGGATCGCGGACTACGTGTTGATCAACGACAACG CGCCCCAGGAGATCAAGGCCCAGTACCCCCTACGCGAAGCACGCGTGGACGTCTCGGAAGTCGCCGGCAAGCCAGGCGTCTACCGCGCCACGGTGTTCCT GCGTCCGCATTTCCAGCTGGAGGAGCTGACCGCGTCGATCCGTCTGGTGGCCAGCCTACCGCCGCCTGTAGCGGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCGACGCCCCCGCCGGCCGTTTCGGCGGGGGCTCGCCCACATCACGATCCACTCTGTTTCCAGACCCAGGAGTTATCCGCGATGGATGCCATCATTCTC GACCTCGGCGACGACATCAAAGGCGACAGCCTGCTCGAGGGCTACACCGACAAGATCGAGTTGATGTCCTACAGCCACAATGTGGCAATGCAGGTCACCA ACGATGTCAGCAACTCGGAGCGCACCTCCGGCAAGCCGCACATCGGCGAGTTCACCGTCACCAAGTTCGTCGATACCGCCACTCCCTCGCTCAACGAATA CTGCTGTGCCGGCAAACCCATCACCACAGCCAAGATCACCATCGGCCGCAACGCCGCCGAAGGCGATGGCAAGTTGCTGCCGTTCATCATCTACACCCTC GATAACGTGGTGCTCTCCAACGTCAGCGTCAGTGGTGGTGCCGGCGGTAAGCCGGTGGAAACCCTGTCGCTGAACTTTACCAAGATTAAATGGGAGCTCA
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| Amino Acid Sequence |
>EvpB family type VI secretion protein
MATKAGASSESTTQTLTLLDRIIAEGRMAHDESQQDYARDMLAEFATQVLDEGMAIDKDTVAMINDRISQIDKLISDQLNEVLHHPDMQKLEASWRGLHM LVDQTETSSRLKLRLLNVTQKELQNDLEKAVEFDQSSLFKKIYEEEYGTFGGHPFSLLVGDYAFGRHPQDVALLEKLSNVAAAAHAPFIAAANPKLFDMN SFTELAVPRDLSKIFESLELIKWRSFRESEDSRYVSLVLPNFLLRLPYGPDTNPVEGMDYVEDVNGTDHSKYLWGNAAWLLAQRITSAFAKYGWCAAIRG AEGGGAVEGLPAHTFRTLSGDLSLKCPTEVAITDRREKELNDLGFISLCHKKNTDMAVFFGGQTTNKARLYNTNEANANARISAMLPYVLAASRFAHYLK VIMRDKVGSFMTRDNVQTYLNNWIADYVLINDNAPQEIKAQYPLREARVDVSEVAGKPGVYRATVFLRPHFQLEELTASIRLVASLPPPVAA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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