Pseudomonas mendocina EGD-AQ5, O203_RS36125 (ampC)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina EGD-AQ5 contig2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCGCCTTTTTTACAACGGCATATTCCGGCTTTTACCTAACGAGGCCTGCAATGACCGATGAAATCGACCAGACCCTGATCGCCGCCCTGATGGAAGATTC GCGGCGTTCACTCAAAGCCCTGGCGCAGATCAGTGGCCTTTCCTCCCCCAGCGTGGCCGAGCGGCTGCGCCGCCTGGAGGAACGCGGCGTGCTCAAGGGC TATACGGTGGAGATCGATCCGCGCCATTTCGGCTATCAGTTGCAGGCCATCGTTCGCGTGCGACCGCTGCCCGGCAAGCTGCATGAAGTGGAGCGACTGA TTCAGGCCACGCCCGAGTTCACCGAATGCGACAAGGTCACCGGCGAGGACTGCTTCGTGGCTCGCCTGCACGTGCGCTCCATGGAGCAACTGGACGAGGT GCTCGACCGCATCAACGGCTACGCCGAAACCAACACCGCCATCGTCAAGAAGACCTCGGTGCCCCGCCGCCTGCCCCCGATGAACTGACAAGGAACGATC
|
|
| DNA Sequence for Gene |
>O203_RS36125
|ampC
ATGCGCCCATCCCTTCGCCCCCTGCTCGTCACGCTCGGCCTTTGCCTGGGTAGCCAATCGGCCTTCGCCGAGCTGAACCAGGCCGTCGATGCTGCCGTGA AACCGATGATGCAGACCTATGCCATCCCAGGCATGGCCATCGCCATCAGCCACAAGGGCCAGCAGCATTTCTTCGAATACGGCGTCGCCTCACATGAAAG CGGCCAGGCGGTGGATCGCCACACCCTGTTCGAACTGGGTTCGATCAGCAAACTGTTCACCGCCACCCTCGGCGCCTACGCCGAAGCGCGCGGCACGCTG AACCTCAGCGACAACGCCAGCCAATATCTGCCAGAGCTGCGCGGCACTGCCTTCGATCACATCAGCCTGCTGGATCTGGCTACCTACACCCCAGGTGGCC TGCCACTGCAACTTCCGGACGCGGTCAGTAGCGAACGGCAGATGCTCGACTACTACCGCAACTGGCAGGCGGTTTATGCGCCGGGTATGCAGCGGCTGTA TTCCAACCCCAGCATCGGCCTGTTCGGTCACCTGGCAGCGGCCAGTATGGCCAAGCCGTTTCAGCAGTTGATGGAGAAGGACCTGTTGCCGCAACTGGGC ATGCAGGAAAGCTACGTGCAGATACCGGCCGAGCAGATGACGCGTTATGCCTGGGGCTACCGCGACGACAAGGCCGTGCGCGTGGGTCCCGGCGCGCTGG ATGCCGAAGCCTACGGCTTGAAATCCACTGCCGCCGACATGCTGCGCTTCATCGACGCCAACCTGCACCCTGACAAGCTGCCCACACCGCTGCGTCAGGC CGTCAGTTCCACCCATCGCGGTTACTACCAGGTCGGCGACATGACCCAGGCCCTGGGCTGGGAACGCTATGCCTACCCCATCAGTCTGGCGAGACTACAG GCTGGCAACTCCGCAGAAATGGCGCTGCAACCCCAGCCGGTGGAGCGCTTCAGCGTGCCCAAACCAGCCGAGGGTGACCTGCTGCTGAACAAGACCGGCT CGACCAACGGTTTCGGCGCCTACATCCTGCTGCTGCCGGCGCGCGATACCGGCCTGGTGATACTCGCCAACCGTAACTACCCCAATGCCGAGCGCGTACG CCTGGCGTTGCAGTTGCTCGAGAGCCTCGAACCCTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCTGGTTTGCAAGGCATCGGTGCGCAGGATGCGCACCTTACCCTTACAGACTGCGCGCGATCACCATCCGCTGCACGTCGCTGGTGCCTTCGTAGATCTG GCAGACGCGCACGTCACGGTAGATGCGCTCGACCGGGAAGTCCTTGAGGTAGCCGTAACCGCCTAGCGTCTGGATCGCCGCCGAGCACACCCGTTCGGCC ATCTCCGAGGCGAACAGCTTGGCCATCGACGCCTCGGTCAGGCATGGCTGGCCTGCCTCACGCAGGCTCGCCGCGTGGTGCACCATCTGCCGCGCCACGG CGATCTGCGTGGCCATGTCGGCCAGGCGAAAGGCCACCGCCTGGTGTTCGATGATCGGCTTGCCGAAGGTCACTCGCTCGTGGGCGTAATCACGCGCCGC CTCGAACGCGGCGCGGGCCATGCCCACCGACTGCGCGGCGATGCCGATGCGTCCGCCTTCCAGGTTGGCCAGGGCGATACGATAGCCTTCGCCCTCCTCA
|
|
| Amino Acid Sequence |
>beta-lactamase
MRPSLRPLLVTLGLCLGSQSAFAELNQAVDAAVKPMMQTYAIPGMAIAISHKGQQHFFEYGVASHESGQAVDRHTLFELGSISKLFTATLGAYAEARGTL NLSDNASQYLPELRGTAFDHISLLDLATYTPGGLPLQLPDAVSSERQMLDYYRNWQAVYAPGMQRLYSNPSIGLFGHLAAASMAKPFQQLMEKDLLPQLG MQESYVQIPAEQMTRYAWGYRDDKAVRVGPGALDAEAYGLKSTAADMLRFIDANLHPDKLPTPLRQAVSSTHRGYYQVGDMTQALGWERYAYPISLARLQ AGNSAEMALQPQPVERFSVPKPAEGDLLLNKTGSTNGFGAYILLLPARDTGLVILANRNYPNAERVRLALQLLESLEP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|