Pseudomonas mendocina EGD-AQ5, O203_RS33260
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina EGD-AQ5 contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AGTGCCGGTCTGCTGTGGATGCTGGTGCTGATGTTCCAGGTTGGCAGCCGTGGCCTGACCGACACCAACAAGACCCGCGTGGGGCTGCTCAGCCTGTTCT GGCACTTCCTCGACGTGGTGTGGATCTGCGTGTTTACCGTCGTCTACCTGCTGGGGGTGCTGTAAATGGCTCACCAAGACAATCACGCCGCCCACGCCGT GGGCTTCAAGGACTACCTGACCGGTTTCATCCTGTCGGTGATCCTCACCGTGATCCCCTTCATGCTGGTCATGCATCCCGAAGTGCTGGGCCTGAGCCGT GGCGCGACCCTGATCACCGTGGTGCTCTTCGGCCTGGCGCAGGTGCTCGTCCACCTCGTGTACTTCCTGCACATGAAGACTGACGCGGAAGGCCGCTGGA ACGTCGTTTCGATGATCTTCACCGTGCTGATCATCGCGTTCGTGGTCGGCCTGTCGGTCTGGATCATGTGGAGCATGCACTATCACATGATGATCAACTG
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| DNA Sequence for Gene |
>O203_RS33260
ATGCTGGCGCTCCTGAAGCAGTACCTCAACCTCGCCAAGCCGGGCATCGTCTTCGGCAATCTGATTTCCGTGACGGGCGGTTTCTTCCTGGCTTCGCGTG GCGATGTGAACCTGGCGCTGTACCTTGCGACAGCGCTCGGGGTTTCGCTGGTGATCGCCTCAGGCTGTGTGTTCAACAACTACATCGATAGGGACATCGA CCAGAAGATGGAGCGCACGCGTAATCGCGTTCTGGCGCAGGGGCTGGTTTCACCTGCGCACGCCATTGTCTATGCCTTCGCGCTCGGGGTAGCGGGGGTG GCGTTGCTGTATGCCGCCACCAATACCCTGGCCGTGATGCTGGTGCTGATGGGCTTCGTGGTCTATGTCGGCCTCTACAGCCTGTGGCTCAAGCGTGGCT CGGTGTACGGCACCCTGGTCGGCAGCCTGTCCGGGGCGGCTCCGCCCGTGGTTGGCTACTGCGCGGTGAGCAACGAGTTCGATGCCGGCGCGGCCATCCT GTTGTTGATCTTCAGCCTGTGGCAGATGCCGCATTCCTATGCCATCGCCATCTTCCGTTTCAATGACTACCAGGCCGCGAACATCCCGGTGCTGCCCGTC ATCAAGGGGATCTCGGCGGCCAAGCGGCAGATCGTGCTGTACATCGCCGCCTTCGTGGTCGCGACCCTGATGCTGACGCTCAGCGGTTACGCCGGCTACA GCTACTTCGTGGTTGCCGCGCTGAGCGGTGCCTACTGGTTGTGGATGGGCGTATCGGGCTACAAGGCCGTCGATGATCGGGTGTGGGCGCGCAAGCTGTT CACCTTCTCCATCATCAGTATCACCATGCTCAGCGTGATGATGTCGGTGGATTTCATCTCCGCGCCCGAGCAGGTATTGGTGACCTCCATCAATCACCTG TGCAGCCAGTTTGCCGACAGTGCGCAGGGTATCTGCGCGGTGGTCGCCGGTATCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCTTGGTTCTGTGGGGGGCTTCAGTCGCGATTGTCGCCGCTGAAGCGCCTCCCACGGGTGCCACGCTTCATTGCCTGTAGGAGCCCCGGGGCGAAGCTTT GCTGGCACCTGCCAGTCTGTCGCTACTGAAGCCCGATCTACCCTACGCAATCACCTGCAACTTTGGCCAGGTGGCCAGCCAGTTCTTGTCATGCAGGCGC TGTTGGTAGATCTGACTCTTCTCGTTCTGAAAGCGCCCGGCCGGGCGCACGATAAGGCCGAACAGATCCTCCAGGCCCAGCGGTGCGGCGACCTCCAGCC TGTCTTGTTCATCGAGCCTTATGGCCACCGCTGTCGCGGTCTCTGGCCAGTGCCGCATCGCTTCGGTAGCCGAGGCGTAAGGCGCATCGTCATTGCGCAG ATGCATGCGTGCCTGATTCTTCACCGACCACAGCAGCGATTCGTCCCTGTGGCGCAGGATCGTCTCCAGTTCAGCGTCGCGAGCGGGGGCGGTTTGGCTG
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| Amino Acid Sequence |
>protoheme IX farnesyltransferase
MLALLKQYLNLAKPGIVFGNLISVTGGFFLASRGDVNLALYLATALGVSLVIASGCVFNNYIDRDIDQKMERTRNRVLAQGLVSPAHAIVYAFALGVAGV ALLYAATNTLAVMLVLMGFVVYVGLYSLWLKRGSVYGTLVGSLSGAAPPVVGYCAVSNEFDAGAAILLLIFSLWQMPHSYAIAIFRFNDYQAANIPVLPV IKGISAAKRQIVLYIAAFVVATLMLTLSGYAGYSYFVVAALSGAYWLWMGVSGYKAVDDRVWARKLFTFSIISITMLSVMMSVDFISAPEQVLVTSINHL CSQFADSAQGICAVVAGI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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