Pseudomonas mendocina EGD-AQ5, O203_RS29990
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina EGD-AQ5 contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GCACCATCCCCCTGGCGGTGATCGCGCGGATGACCCGCTCGGCCATGCTCGAAGTGCTGCGCGAGGACTACATCCGCACCGCGCGCGCCAAGGGCCTGTC GCCGACGCGGGTGGTCTTCGTGCATGGCCTGCGCAATGCCTTGATCCCGGTGCTGACCGTGTTCGGCCTGCAGGTCGGCGCCCTGCTGGCAGGCGCAGTG CTGACCGAAACCATCTTCTCCTGGCCGGGCATCGGCAAGTGGCTGATCGAAGCCATCGGCGCCCGCGACTATCCGGTGGTGCAGAACGGCATCCTGCTGA TCGCCTGCCTGGTGATCCTGGTCAACTTCACCGTGGACATCCTCTATGGCCTGGCCAATCCACGTATTCGCCATCAGAAGTAAGGAAGGCGTGATGAATC GACAGACCCTAGGGTGTCGCGGAGCCGCCCAGGCCGTGCGCCCCAATAGCGGCGACCAACCATCGGTGCGCACAGCGCACCCTACCCAGGGGGTATGCCC
|
|
| DNA Sequence for Gene |
>O203_RS29990
ATGACTGCAGCCACCAGCCTCGACCAGAGCCTGCTCTACCCCTCGCCGCTGAAAGAATTCTGGCAGGCCTTCAGCCACAACAAGGGCGCCGTCTGTGGCC TCGGCTTCATGCTGCTGATGGTGTTCTGCGCGCTGTTCGCCCCCTGGGTCGCGCCGCATCATCCCAGCGAGCAGTATCGCGATTTCCTGCTCACCCCGCC GGTCTGGCTGGATGGTGGTCAGTGGCGCTTCCTGCTCGGCACCGACGAGCTGGGCCGCGACCTGCTCTCGCGCCTGATCCACGGTGCACGCCTGTCGCTG CTGATCGGCCTGGCTTCGGTGGTGCTGTCGCTGATTCCCGGCATCCTGCTGGGCCTGGTTGCCGGTTTTTTCCCGCGTCTGCTCGGCCCCGGCATCATGC GCCTGATGGACATCATGCTGGCGCTGCCATCGCTGCTGCTGGCGGTGGCCATCGTCGCCATCCTCGGCCCAGGGCTGATCAACACCATTTTCGCCATCGC CATCGTCTCGCTGCCCTCCTACGTACGCCTGACCCGCGCGGCCGTGATGGGCGAGCTGAACCGCGACTACGTCACCGCTGCGCAACTGGCCGGCGCCAGC CTGCCCCGGCTGATGTTCTTCACCGTGCTGCCCAACTGCATGGCGCCGCTGATCGTGCAGGCCACCCTGAGCTTTTCCTCGGCGATTCTCGACGCCGCCG CGCTAGGCTTTCTCGGCCTCGGCGTACAACCGCCGACACCCGAGTGGGGCACCATGCTGGCCTCGGCGCGCGACTACATCGAACGCGCTTGGTGGGTGGT GACCCTGCCTGGCCTGGCGATTCTGCTCAGCGTGCTGGCTATCAACCTGATGGGTGACGGCCTGCGCGATGCCCTCGATCCGAAACTGAAGAACGCCATC TGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGAGGCCCATATGCACAAGATGATCTCGGTGCGCATGGCGCACCACAGCTGCGCAGCGTGGACGGGAGAAGCATCGTCCATCCTACGCACGGAGGGCACC CGATGAGTCTGCTGGATATCCGCAACCTCTCCGTACGTTTCGGCGCGGCCGACGCCGTGCCGGTGGTCGACGGGCTCGATCTGAGTGTGGAAAAAGGTGA AGTGCTGGCCATCGTCGGCGAGTCCGGCTCTGGCAAGTCGGTGACCATGATGGCGCTGATGGGCCTGATCGACGCACCCGGCATCGTCCAGGCCGATTGC ATGCAGTTCGACAGCACCGACATGCTGCGTCTGAAAGGTCGGCAGCGTCGGCGTATCGTCGGCAAGGACCTGTCCATGGTCTTCCAGGACCCGATGACCG CGCTCAACCCCAGCTACACCGTAGGCTTCCAGATCGAGGAAGTGTTGCATCAGCACCTCGGCCTGAAAGGCAAAGCGGCGCGCGCTCGCGCCCTGGAGCT
|
|
| Amino Acid Sequence |
>peptide ABC transporter
MTAATSLDQSLLYPSPLKEFWQAFSHNKGAVCGLGFMLLMVFCALFAPWVAPHHPSEQYRDFLLTPPVWLDGGQWRFLLGTDELGRDLLSRLIHGARLSL LIGLASVVLSLIPGILLGLVAGFFPRLLGPGIMRLMDIMLALPSLLLAVAIVAILGPGLINTIFAIAIVSLPSYVRLTRAAVMGELNRDYVTAAQLAGAS LPRLMFFTVLPNCMAPLIVQATLSFSSAILDAAALGFLGLGVQPPTPEWGTMLASARDYIERAWWVVTLPGLAILLSVLAINLMGDGLRDALDPKLKNAI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|