Pseudomonas mendocina EGD-AQ5, O203_RS29595

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 533 667 3.22E-16
SMART SM00091 pas_2 IPR000014 PAS domain 817 883 7.7E-6
Pfam PF00989 PAS fold IPR013767 PAS fold 682 806 2.6E-7
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 943 1113 5.9E-62
CDD cd01949 GGDEF IPR000160 GGDEF domain 943 1105 1.41741E-61
SMART SM00086 pac_2 IPR001610 PAC motif 626 669 1.2E-4
Gene3D G3DSA:3.30.450.20 PAS domain - - 557 672 1.4E-17
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 666 807 1.42E-17
SMART SM00267 duf1_3 IPR000160 GGDEF domain 931 1107 2.7E-67
Pfam PF08447 PAS fold IPR013655 PAS fold-3 581 663 2.2E-13
Gene3D G3DSA:3.30.450.20 PAS domain - - 820 942 3.8E-29
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 817 1364 0.0
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 442 543 1.27E-7
Gene3D G3DSA:3.30.450.20 PAS domain - - 256 374 5.6E-11
Gene3D G3DSA:3.30.450.20 PAS domain - - 679 819 1.0E-21
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 257 375 1.21E-8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 829 939 2.74E-23
SMART SM00091 pas_2 IPR000014 PAS domain 269 334 0.38
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 947 1108 9.42E-50
CDD cd00130 PAS IPR000014 PAS domain 558 666 9.51585E-9
Pfam PF00563 EAL domain IPR001633 EAL domain 1123 1358 1.6E-75
CDD cd00130 PAS IPR000014 PAS domain 826 928 5.66404E-12
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 279 382 1.9E-5
SMART SM00086 pac_2 IPR001610 PAC motif 767 809 7.4E-6
CDD cd01948 EAL IPR001633 EAL domain 1123 1363 5.54683E-110
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 1118 1372 3.0E-100
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 821 937 6.4E-19
Coils Coil Coil - - 1111 1131 -
SMART SM00091 pas_2 IPR000014 PAS domain 681 748 1.4
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 942 1103 7.4E-51
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 1117 1372 1.0E-104
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 937 1108 1.5E-44
Pfam PF13426 PAS domain IPR000014 PAS domain 829 930 1.6E-13
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 677 816 2.5E-14
SMART SM00086 pac_2 IPR001610 PAC motif 889 931 2.1E-5
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 939 1105 6.4E-42
SMART SM00052 duf2_2 IPR001633 EAL domain 1117 1363 2.5E-124
Pfam PF13188 PAS domain IPR000014 PAS domain 389 471 0.002
SMART SM00091 pas_2 IPR000014 PAS domain 548 617 1.1E-5
CDD cd00130 PAS IPR000014 PAS domain 690 806 7.02993E-7
Pfam PF13188 PAS domain IPR000014 PAS domain 283 325 0.012
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 545 675 6.1E-8
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 1122 1368 2.22E-91
Gene3D G3DSA:3.30.450.20 PAS domain - - 375 534 3.0E-6
Coils Coil Coil - - 250 270 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.