Strain | Pseudomonas mendocina EGD-AQ5 contig1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CGCGGATGACTGCGTTCATCTGCGATTACCTGCGCATCATGTCTTCCGGCAACATGGCGCCGCACGAACTCGAAGGCCTGTTCGACATGGAGCTGGCCAG CCTCAAGGAGGAAGTGGAGCACCCGGCGCACGCCGTGGCCAAGGTCGCCGACGGCATGCCGGCCATGGGTATCGTCGCGGCCGTGCTGGGCATCGTGATC ACCATGTCGATCCTGGCAGAGGCGGACAACGCGCAGATCGGTGAGAAGGTGGGTACTGCTCTGGTCGGTACCTTCCTCGGCATTCTCGCTTCCTACGGTT TCTTCGGCCCACTGTCGAACGCGCTGGAACATGACGCCAAGGAAGAGCTGAACCTTTACGAAGCGATCAAGGCGACCCTGGTCGCGTCTGCCTCGGGCAT GCCGCCGACCCTGGCCGTAGAGTTCGGGCGCAAGGTGTTGTATCCGGCGCATCGTCCGAGCTTCAGCGAGCTCGAACAGGCCATGCGCGGCAGCTAAGCC
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DNA Sequence for Gene |
>O203_RS28780
ATGGAAAATAACCAACCCATCATCGTCAAGCGGGTCAAGAAGACCGCTGGCGGACACCATGGCGGTGCCTGGAAGATCGCTTTTGCCGACTTCGCAACCG CCATGATGGCGTTCTTCCTGGTCATGTGGCTGATGACATCGGCCACTCCGGAACAGAAGAAAGCCATTTCCGGCTATTTCCAGGACCCGATCGGTTTCAC CGAGAGTGCCAGTCCATACGCCATCGACCTGGGCGGCACGCCTACGCCAGCGCCCGAGCGGACCCTTAATCCTGACATCTCCGAGACGCCGGAGAGTCAA CCGGATGAGTCCGGCGTCAGCACCGATCAGATCGAAACCCTGGCTGAAAAGATGGAGCAGGAGCGTCTGGAACTGCTGTTGCAGGAGCTGCAGAACAAGG TCGAAGAGAATCCCGAGCTGCAGCGTTTCAAGGACCAGATACTGTTCGAAATCACCCAGGATGGCCTGCGCATCCAGATCATGGACGCCGAGAATCGACC GATGTTCGCCCTCGGCAGTGCCAACCTTCAGCCCTATTTCGAAGACATCCTGCTGGCCATGGCCGACACCATTCGCGCGGTGCCGAACAAGATCAGCATC AGCGGTCACACCGATGCCAAGCCGTTCGTAGGGCGCGGCGATTTCGGCAACTGGGAGCTGTCATCCAACCGTGCCAACGCCGCGAGGCGCACATTGGTGG CGGGCGGGTACCCGGACGAGCAGGTGGCGCGGGTGGTCGGCTATGCCTCGTCGGCGCTGTTCGACCGCGAGGACCCATTCAACCCGGTCAATCGGCGCAT CGATATCGTTGTGCTGACCAAGAAGGCGCAGCGCGCCATCGAGGGCGAACAAGGCGTCGAGGAAGGCACTGCGCCCGCGCCAGGCGAGGCTCCGGCGGAC GCGGCGAGTGAACCGCTAGCGCCAGAGCAACTGCAGCAGCGCCTGAATATCTTCGAAGAAGGCGCCTTGCAGTTCGATCAACTGAATAATCAGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
TCGTCTTCCGGCAGGCTGGCGATGATGTGCCGGTAGCTGGCCATGCGCTGTGGCTGCACGCGGCCGTCTTCCAGGGCCTGCAAAAGCGCACACCCGGGTT CGCGATCATGCTTGCAGTCACGGAAGCGGCAGCGCCCGAGCAGGTCGTGGAATTCGATGAAGCCTGCTTCCACGTCATCACGACTGACATGGCCGAGGCC GAATTCGCGAATGCCCGGGGAGTCGATCAATTGGCCACCACCGGGAAAGTGGAAAAGCCGTGCGGTGGTGGTGGTGTGCGTCCCCTTGCCGGTCAACTCC GACAGCGCGCCGACACGCGTATCTACACCGGGCAGCAGGCTGTTGACCAAGGATGATTTGCCCACGCCAGATTGGCCGACGAATACGCTGACGTTTCCGT TCAGGCGATGTTTCAGCTGCTCCATGCCATCGCCCTGATGGGCCGAGACTTCCAGCAGCGGGTACTCAAGCTCACGATAGACCTTGAGCAGCGCGTCCAG
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Amino Acid Sequence |
>flagellar motor protein MotB
MENNQPIIVKRVKKTAGGHHGGAWKIAFADFATAMMAFFLVMWLMTSATPEQKKAISGYFQDPIGFTESASPYAIDLGGTPTPAPERTLNPDISETPESQ PDESGVSTDQIETLAEKMEQERLELLLQELQNKVEENPELQRFKDQILFEITQDGLRIQIMDAENRPMFALGSANLQPYFEDILLAMADTIRAVPNKISI SGHTDAKPFVGRGDFGNWELSSNRANAARRTLVAGGYPDEQVARVVGYASSALFDREDPFNPVNRRIDIVVLTKKAQRAIEGEQGVEEGTAPAPGEAPAD AASEPLAPEQLQQRLNIFEEGALQFDQLNNQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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