Pseudomonas mendocina EGD-AQ5, O203_RS26060
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas mendocina EGD-AQ5 contig1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGAGTCGCTCGTGATGAATCGTCATCTGCGTTCTCGGGTTCGATGGAGCTATCTGCTGGCAGTGCTTGCGCTGCAGGGGTGCGTGTTGGCCCCGCATGCG GCGCCGATCAACCCGGCTATCGATGGGCGTCTAGTTTCCGCAGAGAACGGTCAGCCGGTGCGTGGTGCGGCGCTCATTCTTGAGGTCGCCAGCGACACCT CGCACAGCTATCAGGTGCGCAGCGACAGTCAGGGTCGATTCGCCTTTGGCGCCCACGAGGATTGGCGGCTCTTCGCTGTGCTGGCAGATGCGCCGCTGTG CATCGTTGTCATGACGGTCGAAGCGCAAGGGTTCCAGCCACGGCATTGCGTCTGGACGTCCCGTAATGGTTGCCCGACCCAGAGCCCGCCGATAGGCGAC CTGGAATTGATCCCCGCGCAGTGGAATGACCACCGCGCCGACGCTTTGCTGGCCAACGCCGGCGATTGTGTCGACCCAGCCACATGGACGAGCCGCTGAG
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| DNA Sequence for Gene |
>O203_RS26060
ATGTCTTTCAACCACTACTACCAAAGCGAACTCACTGCCCTGCGCCAACTGGGCAAGCGTTTCGCCGAGCGCAGCCCGGCGTTGGCGCCGTTCCTCGGCC AGGCGGGGCGCGACCCGGACGTCGAGCGTCTGCTCGAAGGCTTTGCCTTCCTCACCGGGCGCCTGCGGCAGAAGCTCGACGACGAGCTGCCGGAGCTGAC TCACTCGCTGATGCATCTGCTGTGGCCGAACTACATGCGCCCGCTGCCGGCCTTCAGCATGCTGCAGTTCGACCCGTTAACCCGCCCCGGTCCGGCGCTG CCGGTTGGTCGTGGCACGCCGGTAGAAGCCAAGGCCATCGAGGGCGTCACCTGCCGCTTTCGCACCTGCTTCCCCACCGAAGTGCTGCCGCTGGCGTTGA ACGGCCTGGATTACTCGGTCAAGGGTGACGGCGCGCTGCTCAGCCTGCGTCTGGGCATGAGCGCCGACGGTCATATCGGCGAGATCGGCCTGAACAAGCT GCGTCTGCACCTGGCCGGCGAGCGTTATATCGGTCAGATGCTCTACCTGGCGCTGCTGCGCAATCTCGGCGGCATCCAGCTGGTGCTGCTCGATGCTGCT GGCAAACCGATGCAGGATGCCTTCGGCCAGACCCTCGGCACGCTGCAGCTCAAGCCTGAGAAGGTGCAGCCGGTGGGCTTCGCCGAAGACGAGGCGTTGA TCCCCTACCCGCTGAATACCTTCCGCGGCTACCGCTATCTGCAGGAATACTTCGCCTTCCAGGAGAAGTTCCTCTTCGTCGACCTGCTCGGCCTGGAGGC CATTCAAAGCTTGCCCGAGGATCTGCTCAAGCAGGCGCGCGGCCTGGAGCTGCGTTTCGATATCCACAAGGCGGGCGTGCAGCGTATCCGTCCGACCCTG GAAAACGTGCGCCTGTACTGCACGCCGGTGGTCAACCTGTTCCAGCATGACGCCATCCCGATCCGCCTCGATGGCAAGCAGGATCAGTACCTGCTGCTGC CGGCCGAGTTCGATTCGCAGCATTGCGGTGTGTTTTCGGTGGACCGCGTCACCGGCTGGAAGCCGGGCGGCATGGGCTACGAGGAGTACGTGCCGTTCGA GTCGTTCGAACATGACCCCAGCTTCGACGTGCCGGTGGCGCGCCCGCACTACAGCGTGCGCCAGCAACCCTCGATGCTCGGCGACGGCCTGGAAACCTGG CTCAGCTTCGGCCTGCGCAACCTCGACCAGCACGAGACACTGTCCATCGAGCTGACCTGCACCAACCAGAACCTGCCGCGTCAACTGCGCCTGGGCGATA TCTGCCTGCCCAGCGAGGACACCCCGGACTTCCTCAGCTTCCGCAATATCAGCGCCGTTACACCCAGTTATGCGCCGCCGCTGCACCGCGACTTCCTGTG GAAGCTGATTTCCAACATGTCGCTGAACTACCTGTCGCTGGCCAACGTCGAGGCGCTCAAGGTGATCCTCGAAACCTACGACCTGCCGCGTTACTACGAC CAGCACGCCGAGCGCGTCAGCAAGCGCCTGCTCGGGGGCCTCAAGAACATTGGCCATCGCCACGTCGACCGCCTGCACCGCGGCCTGCCGGTGCGCGGCG TACGCACTGAACTGACCATGAACCCGGAAGGGTATCTGGGTGAGGGCGATCTATTCCTCTTCGCCTCGGTACTCAATGAATTTTTCGCCCTCTACGCCAG CCTCAACAGCTACCACGAGCTGCACGTACAGAGCACACAGGGAGAGTTGTACAAATGGACGCCACGTATGGGGCAGCAGCCCCTGCTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCGATTGAGCAAAGGCATCCGCGAGTACAGCCTGTTCCAGGCCGTACAGCTGGTGCTGGAGCGCTTGGGTGCTGCGCATCCGCATCTGGATGAGGAGCG CCTCTACGAGTACCTGGAGTTCCAGGCCAACCCGAGCCTGGGTTTTCCTGGCAGCGATATCGATCGCGTGCAGTTCTTCGAGGAGCATGGCGAGCTGCGC GCGCGCATGCGCGTCAACCTGGTAGGCCTGTTCGGCGGAGGTTCGCCACTGCCGGCCTTCTACAGCGAACAGGCCCTGGGCGACAGCGAGGACGGCAACC CGACCCGCGATTTCCTCGACCTGTTCAACAACCGTCTGCAGCGCCTGTTGTTGCCGATCTGGCAGAAGTACCGCTACCGCGCCAGCTTCCAGAGCGGGGC CATGGACGCCTTCTCGGCGCACCTGTTCGCCCTGATCGGCCTGGGCAGCGAGCAGATTCGCCAGGCCCAGGAGCTGAACTGGAAGCGCCTGCTGCCCTAT
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| Amino Acid Sequence |
>type VI secretion protein
MSFNHYYQSELTALRQLGKRFAERSPALAPFLGQAGRDPDVERLLEGFAFLTGRLRQKLDDELPELTHSLMHLLWPNYMRPLPAFSMLQFDPLTRPGPAL PVGRGTPVEAKAIEGVTCRFRTCFPTEVLPLALNGLDYSVKGDGALLSLRLGMSADGHIGEIGLNKLRLHLAGERYIGQMLYLALLRNLGGIQLVLLDAA GKPMQDAFGQTLGTLQLKPEKVQPVGFAEDEALIPYPLNTFRGYRYLQEYFAFQEKFLFVDLLGLEAIQSLPEDLLKQARGLELRFDIHKAGVQRIRPTL ENVRLYCTPVVNLFQHDAIPIRLDGKQDQYLLLPAEFDSQHCGVFSVDRVTGWKPGGMGYEEYVPFESFEHDPSFDVPVARPHYSVRQQPSMLGDGLETW LSFGLRNLDQHETLSIELTCTNQNLPRQLRLGDICLPSEDTPDFLSFRNISAVTPSYAPPLHRDFLWKLISNMSLNYLSLANVEALKVILETYDLPRYYD QHAERVSKRLLGGLKNIGHRHVDRLHRGLPVRGVRTELTMNPEGYLGEGDLFLFASVLNEFFALYASLNSYHELHVQSTQGELYKWTPRMGQQPLL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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