Pseudomonas aeruginosa UCBPP-PA14, PA14_42700 (alkA)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd00056
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 128 243 5.3E-33
CDD cd00056 ENDO3c IPR003265 HhH-GPD domain 128 293 9.97225E-30
PANTHER PTHR43003 DNA-3-METHYLADENINE GLYCOSYLASE - - 79 291 3.5E-45
Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein IPR003265 HhH-GPD domain 132 259 1.4E-7
FunFam G3DSA:1.10.340.30:FF:000008 DNA-3-methyladenine glycosylase 2 - - 127 243 1.1E-45
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 117 293 1.47E-45
SMART SM01009 AlkA_N_2 IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 9 126 8.4E-49
SUPERFAMILY SSF55945 TATA-box binding protein-like - - 9 107 1.88E-27
Gene3D G3DSA:3.30.310.20 - IPR037046 DNA-3-methyladenine glycosylase AlkA, N-terminal domain superfamily 9 126 5.3E-30
Gene3D G3DSA:1.10.1670.10 - IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal 245 296 4.1E-11
SMART SM00478 endo3end IPR003265 HhH-GPD domain 136 294 3.6E-15
Pfam PF06029 AlkA N-terminal domain IPR010316 DNA-3-methyladenine glycosylase AlkA, N-terminal 10 126 5.3E-32

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.