Pseudomonas aeruginosa UCBPP-PA14, PA14_42220

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other UCBPP-PA14 genes in this class
Motility & Attachment Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF03707 Bacterial signalling protein N terminal repeat IPR005330 MHYT domain 52 109 1.2E-20
Pfam PF03707 Bacterial signalling protein N terminal repeat IPR005330 MHYT domain 115 171 3.3E-15
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 250 682 0.0
CDD cd01949 GGDEF IPR000160 GGDEF domain 264 421 5.03136E-70
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 434 685 5.0E-101
Pfam PF00563 EAL domain IPR001633 EAL domain 440 674 4.1E-73
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 258 436 2.3E-62
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 439 682 8.76E-90
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 437 685 1.1E-100
Coils Coil Coil - - 428 448 -
SMART SM00267 duf1_3 IPR000160 GGDEF domain 252 423 7.3E-68
Pfam PF03707 Bacterial signalling protein N terminal repeat IPR005330 MHYT domain 182 245 3.3E-14
SMART SM00052 duf2_2 IPR001633 EAL domain 433 679 1.7E-121
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 261 421 1.7E-46
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 263 418 7.8E-51
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 268 425 3.37E-54
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 258 424 2.7E-45
CDD cd01948 EAL IPR001633 EAL domain 439 679 7.4988E-116

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.