Pseudomonas aeruginosa UCBPP-PA14, PA14_41160 (nppD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Sequence Data

Strain Pseudomonas aeruginosa UCBPP-PA14 chromosome, complete genome. [Details]
DNA Sequence Upstream of Gene
GCTCGGCCAGCGTTTTCCTGGAGTCTGGTCGGGGCTGCCGGTGCTCTACCTGCTGATCATCCTGGCCAGCTTCGTCCAGCCGAACTTCTGGTGGCTGCTG GGCATCATGCTGCTGTTTTCCTGGATGAGCCTGGTGGACGTGGTCCGCGCCGAGTTCCTCCGCGGGCGTAACCTGGAATACGTCCGCGCCGCCCGGGCCC TCGGCATGCGCAACAGCGCCATCATGTTCCGTCACATCCTGCCGAACGCGATGATCTCGACCCTGACCTTCATGCCGTTCATCCTCACCGGCGCCATCGG CACCCTCACCTCCCTGGACTTCCTCGGCTTCGGCCTGCCGCCCGGCGCGCCGTCGCTGGGCGAGCTGGTCGCCCAGGGCAAGTCCAACCTCCAGGCGCCC TGGCTGGGCATTTCCGCCTTCGTGGTGCTGGCGGTCATGCTGAGCCTGCTGGTGTTCATCGGCGAAGCCGCCCGCGACGCTTTCGACCCGAGGAAATGAG
DNA Sequence for Gene
>PA14_41160 |nppD
ATGAGCGAGAACATTCTGGAAATCCGCGACCTCGCCGTCGAATTCCTCTCCGGCGAGCAACGCCAGCGGGTGGTCGAAGGCGTCAGCTTCGACATCCGCC AGGGCGAGACCCTGGCCCTGGTCGGCGAAAGCGGCTCGGGCAAGTCGGTGACCGCCCACTCGATCCTGCGCCTGCTGCCCTACTCCGTCGCCAGCCACCC AGCAGGCAGCATCCACTACCAGGGCGAGGATCTGCTCAAGCTCCCGGAACGGCGCCTGCGCGGGATCCGCGGCAACCGCATCGCCATGGTCTTCCAGGAA CCCATGACCTCGCTCAATCCGCTGCATACCATCGAGAAGCAGCTCGCCGAGGTCCTCGCCCTGCACAAGGGCCTGGGTGGCGCCAAGGCCAGCGCGAGAA TTCTCGAACTGCTCGAGCTGGTCGGCATCCCCGAGCCAGCCAAGCGCCTGAAAGCCTATCCACACGAACTCTCCGGCGGCCAGCGGCAGCGGGTGATGAT CGCCATGGCCCTGGCCTGCGAGCCGCAACTGCTGATCGCCGACGAACCGACCACCGCGCTCGACGTCACCGTCCAGTTGAAGATCCTCGATCTGCTCAAG GACCTGCAGGCACGCCTGGGCATGTCCCTGCTGCTGATCACCCACGACCTCAACCTGGTCCGGCGCATCGCCCACCGCGTCTGCGTCATGCAACAAGGGC GGATCGTCGAGCAGGCTTCCTGCCAGGAACTCTTCGCAGCCCCGCGACACCCCTATACCCGCGAGCTGCTCAACGCCGAGCCCAGCGGTGCGCCGGCAGG CAACCCGCCCGGTGAAACCCTGTTGGCGGTGGACGACCTGCGGGTCTGGTTCCCGATCCGCAAAGGCGTGTTCCGCCGCACCGTGGACCACGTCAAGGCG GTCGACGGGGTCAATTTCGAACTACCCCGCGGGCAGACGCTGGGCATCGTTGGCGAAAGCGGCTCGGGCAAGTCGACCCTTGGCCTGGCAATCCTGCGGC TGCTGGAAAGCCAGGGCGGCATCCGCTTCGAAGGCACCCGGCTGGACGGTCTCGCGCAACATGACGTGCGCCCGCTGCGCCGCGAGATGCAGGTGGTGTT CCAGGACCCGTATGGCAGCCTCAGCCCACGCATGTGTGTCGGCGAGATCGTCGGCGAAGGCCTGCGCATCCATAGGATCGGCAGCGAGGCCGAACAGGAG CAGGCGATCATCGACGCGCTGGTGGAGGTCGGGCTCGATCCGCAGACCCGCTACCGTTACCCCCACGAATTCTCCGGCGGCCAGCGCCAGCGCATCGCCA TCGCCCGGGCGCTGGTGCTGAAACCGGCGCTGATCCTGCTCGACGAACCGACCTCGGCGCTCGACCGCACCGTGCAGCGCCAGGTCGTGGAATTGCTGCG GCAACTGCAGGGCAAGTACAACCTCACCTACCTGTTCATCAGCCACGACCTGGCGGTGGTCAAGGCGCTCAGCCACCAGTTGATGGTGGTTCGACATGGC AAGGTGGTGGAACAGGGCAGCGCCGAAGCGGTTTTCGCCTCGCCGCAACATCCCTATACGCAGCAATTGCTGGAGGCCGCCTTCATGGCCCCGGCAAGCG CGGAAAACTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GTAGCAGACAAGGAACGGACCATGGGATTTCTCACAGGAAAACGCGCCCTGATCGTCGGAGTCGCCAGCAAGCTCTCCATCGCTTCCGGCATCGCCGCCG CCATGCACCGGGAAGGCGCCGAACTGGCCTTCACCTACCAGAACGACAAGCTCAGGGGCCGGGTGGAGGAGTTCGCCAGTGGCTGGGGCTCGCGGCCGGA GCTGTGCTTCCCCTGTGACGTGGCCGACGACAGCCAGATCGAAGCGGTGTTCGCCGCCCTGGGCAAGCACTGGGACGGCCTGGACATCATCGTCCACTCC GTCGGATTCGCTCCAGGCGATCAGCTCGACGGCGACTTCACCGCGGTGACCACCCGCGAGGGCTTCCGCATCGCCCACAACATCAGCGCCTACAGCTTCA TCGCCCTGGCCAAGGCCGGACGGGAAATGATGAAGGGCCGCAACGGCAGCCTGCTGACCCTCTCCTACCTGGGCGCCGAACGGACCATGCCGAACTACAA
Amino Acid Sequence
>peptidyl nucleoside antibiotic ABC transporter ATP-binding protein NppD
MSENILEIRDLAVEFLSGEQRQRVVEGVSFDIRQGETLALVGESGSGKSVTAHSILRLLPYSVASHPAGSIHYQGEDLLKLPERRLRGIRGNRIAMVFQE PMTSLNPLHTIEKQLAEVLALHKGLGGAKASARILELLELVGIPEPAKRLKAYPHELSGGQRQRVMIAMALACEPQLLIADEPTTALDVTVQLKILDLLK DLQARLGMSLLLITHDLNLVRRIAHRVCVMQQGRIVEQASCQELFAAPRHPYTRELLNAEPSGAPAGNPPGETLLAVDDLRVWFPIRKGVFRRTVDHVKA VDGVNFELPRGQTLGIVGESGSGKSTLGLAILRLLESQGGIRFEGTRLDGLAQHDVRPLRREMQVVFQDPYGSLSPRMCVGEIVGEGLRIHRIGSEAEQE QAIIDALVEVGLDPQTRYRYPHEFSGGQRQRIAIARALVLKPALILLDEPTSALDRTVQRQVVELLRQLQGKYNLTYLFISHDLAVVKALSHQLMVVRHG KVVEQGSAEAVFASPQHPYTQQLLEAAFMAPASAEN
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site