Pseudomonas aeruginosa UCBPP-PA14, PA14_38570

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01590
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 138 377 1.09E-63
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 139 306 2.2E-63
CDD cd00009 AAA - - 147 309 1.74062E-22
Gene3D G3DSA:1.10.8.60 - - - 310 381 2.1E-17
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 123 309 6.7E-65
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 349 448 1.72E-13
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 429 449 1.2E-8
CDD cd00130 PAS IPR000014 PAS domain 8 97 0.00108385
Gene3D G3DSA:3.30.450.20 PAS domain - - 1 98 2.3E-9
PRINTS PR01590 FIS bacterial regulatory protein HTH signature IPR002197 DNA binding HTH domain, Fis-type 412 429 1.2E-8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 4 96 6.11E-12
Pfam PF08448 PAS fold IPR013656 PAS fold-4 6 97 6.0E-8
FunFam G3DSA:3.40.50.300:FF:000006 DNA-binding transcriptional regulator NtrC - - 129 309 2.4E-70
Pfam PF02954 Bacterial regulatory protein, Fis family IPR002197 DNA binding HTH domain, Fis-type 406 443 2.3E-12
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 158 303 9.4E-9
Gene3D G3DSA:1.10.10.60 - - - 399 451 1.6E-13
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 67 449 2.5E-117

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.