Pseudomonas aeruginosa UCBPP-PA14, PA14_30590

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0019867 outer membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00965
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00593 TonB dependent receptor IPR000531 TonB-dependent receptor-like, beta-barrel 365 877 9.2E-43
Gene3D G3DSA:3.55.50.30 - - - 37 144 4.0E-24
FunFam G3DSA:2.40.170.20:FF:000043 Uncharacterized protein - - 284 884 0.0
Pfam PF07660 Secretin and TonB N terminus short domain IPR011662 Secretin/TonB, short N-terminal domain 66 113 3.9E-7
SMART SM00965 STN_2 IPR011662 Secretin/TonB, short N-terminal domain 65 116 8.7E-10
SUPERFAMILY SSF56935 Porins - - 126 884 2.75E-98
Gene3D G3DSA:2.170.130.10 - IPR037066 TonB-dependent receptor, plug domain superfamily 151 278 2.3E-29
Pfam PF07715 TonB-dependent Receptor Plug Domain IPR012910 TonB-dependent receptor, plug domain 147 267 1.0E-22
FunFam G3DSA:3.55.50.30:FF:000002 Probable TonB-dependent receptor - - 36 144 7.9E-30
PANTHER PTHR47234 - - - 343 884 0.0
CDD cd01347 ligand_gated_channel - - 153 884 8.69614E-73
Gene3D G3DSA:2.40.170.20 - IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily 283 884 1.3E-57

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.