Pseudomonas nitroreducens Aramco J, QX33_RS17845

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00575
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 331 413 3.08E-28
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 626 0.0
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 6 473 0.0
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 9 330 0.0
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 619 705 5.08E-7
CDD cd17748 BRCT_DNA_ligase_like - - 717 787 4.43663E-25
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 455 529 2.3E-30
Gene3D G3DSA:1.10.150.20 - - - 455 529 7.8E-29
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 535 598 6.0E-20
Gene3D G3DSA:6.20.10.30 - - - 404 454 2.5E-13
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 417 608 1.59E-53
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 68 328 4.0E-100
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 505 524 330.0
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 2 67 7.8E-30
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 14 618 0.0
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 67 2.0E-29
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 335 411 7.9E-35
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 537 556 180.0
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 662 681 540.0
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 330 403 3.7E-33
SMART SM00292 BRCT_7 IPR001357 BRCT domain 714 791 6.4E-9
Gene3D G3DSA:1.10.150.20 - - - 623 704 4.9E-8
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 714 788 1.5E-10
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 16 772 2.2E-52
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 420 459 9.8E-12
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 5 329 2.88E-119
Gene3D G3DSA:1.10.150.20 - - - 530 610 8.7E-24
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 705 790 5.2E-24
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 330 403 5.1E-35
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 68 328 2.1E-107
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 715 789 1.4E-17
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 619 793 1.7E-31
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 530 608 4.8E-25
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 471 490 41.0
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 5 788 53.368645
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 7 331 4.6E-127

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.