Pseudomonas nitroreducens Aramco J, QX33_RS14630 (gyrB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas nitroreducens strain Aramco J contig6, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCCCAGTTCGAGCGTACTCTGGCCGAGCTCATCCAGCTCGACGACCTGACGCTCAGCTATTACCGGGGCTGGGACAAGGAACGCGAATTGAGTGAGGTGC TGTCGTCCAGCCTGCTGCGTGATCAGCAGATGGGCCACACCCAGGCGGGGCCTCAACGGGCGGATCTGCGAATTCGCCTGGGAGGACACAATGCCGCGGA GATCCTGTCCCGCGGTCAACAGAAATTGGTGGTCTGCGCGTTGCGGATCGCCCAGGGGCATTTGATCAACCAGGCGAAACGCGGGCAATGCGTCTACCTG GTGGATGACCTCCCCTCCGAATTGGATGAGAAGCATCGGTTGTCTTTGTGCCGGCTTCTCGAAGATCTGGGTTGCCAGGTATTCATCACCTGCGTCGACC CGCACTTATTGAAAGACGGCTGGCGAATGGAAACGCCGGTGTCGATGTTCCACGTGGAACATGGGCGCGTCTCTCAGGACACTACCATCGGGAGTGAAGA
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| DNA Sequence for Gene |
>QX33_RS14630
|gyrB
ATGAGCGAGAACACCTACGACTCTTCCAGTATCAAGGTACTGAAGGGACTGGACGCCGTACGTAAGCGTCCGGGCATGTACATCGGTGATACCGACGACG GCACTGGCCTGCACCACATGGTCTTCGAGGTCGTGGACAACTCGATCGACGAAGCGCTGGCGGGCTACTGCAGCGAGATCAGCATCACCATTCACACCGA TGAATCCATCACCGTGCGCGACAACGGCCGCGGCATTCCGGTGGATATCCACAAGGAAGAAGGGGTCTCCGCGGCAGAGGTCATCATGACCGTCCTTCAC GCCGGCGGTAAGTTCGACGACAACAGCTACAAGGTCTCCGGCGGCCTGCACGGCGTAGGTGTGTCGGTGGTGAACGCCCTCTCCCATGAGCTGCGCCTGA CCATCCGCCGTGAGGGCAAGGTCTGGGAACAGGTTTATCACCACGGCGTTCCGCAATTCCCGCTGCGCCCGGTGGGCGACACCGAAGGTTCGGGCACCGA GGTTCACTTCAAGCCCTCTCCAGAAACCTTCCACAACATCCACTTCAGCTGGGACATCCTGGCCAAGCGGATCCGCGAACTGTCCTTCCTGAACTCCGGC GTGGGCATCGTCCTGCGCGATGAGCGTGCCGGCAAGGAAGAGCTGTTCAAGTACGAGGGTGGCCTGCGTGCCTTCGTCGAGTACCTGAACACCAACAAGA CCGCGGTGAACCAGGTTTTCCACTTCAACTGCCAGCGCGAAGAAGACGGCGTCGGCGTGGAAGTCGCCCTGCAGTGGAACGACAGCTTCAACGAGAACAT CCTCTGCTTCACCAACAACATTCCGCAGCGTGACGGCGGTACCCACCTGGCAGGCTTCCGCTCCGCCCTCACCCGCCACCTGAACAACTACATCGAGCAG GAAGGCCTGGCGAAGAAGTTCAAGATCGCCACCACCGGCGACGACGCCCGTGAAGGTCTGACCGCGATCATTTCGGTGAAGGTACCGGATCCTAAGTTCA GCTCGCAGACCAAGGACAAGCTGGTTTCCTCGGAGGTGAAGACCGCCGTCGAGCAGGAGATGGGCAAGTACTTCGCCGACTTCCTGCTGGAGAACCCGAA CGAAGCCAAGGCCGTGGTCGGCAAGATGATCGACGCCGCCCGCGCCCGTGAGGCCGCGCGCAAGGCTCGTGAGATGACTCGCCGCAAGGGCGCGCTGGAC ATCGCCGGCCTGCCGGGAAAACTCGCCGACTGCCAGGAGAAGGACCCCGCCCTCTCCGAACTGTACATCGTGGAGGGTGACTCCGCGGGCGGTTCTGCCA AGCAGGGCCGTAACCGCAAGACCCAGGCGATCCTACCGCTCAAGGGCAAGATCCTCAACGTCGAGAAGGCTCGCTTCGACAAGATGCTGTCCTCCCAGGA GGTCGGCACGCTGATCACTGCACTGGGCTGCGGTATCGGTCGCGAGGAGTACAACATCGACAAGCTGCGTTACCACAACATCATCATCATGACCGATGCT GACGTCGACGGTTCGCACATCCGTACCCTGCTGCTGACCTTCTTCTTCCGTCAGCTGCCGGAGCTGGTCGAGCGCGGCTACATCTATATCGCACAGCCAC CGCTGTACAAGGTCAAGCGCGGCAAGCAGGAGCAGTACATCAAGGACGACGTGGCCATGGAAGAGTACATGACCCAGTCGGCCCTCGAAGAGGCCAGCGT GCACGTCAACGAAAGCGCCCCGGGCCTGTCCGGCGAAGCGCTGGAGAAGCTGGTCAACGAGTACCGCACGGTCATGCGTACGCTGTCCCGCCTGTCCCGT CTCTATCCGCAGGACCTGACCGAGCACTTCGTCTACCTGCCGCGCATCGATGTCGACCAACTGGGCGACCAGGCTGCCATGCAGGGCTGGCTGGACCAGT ACCAGGCTCGCCTGAAGGCCGCGGAGAAATCCGGTCTGGTGTACAAGGTCAGCCTGCGGGAAGACCGCGAGCGTCACCTGTGGCTGCCGGAAGTCGAGAT GGTTGCCCATGGCTTGTCGAGCTACGTCACCTTCAACCGCGACTTCTTCGCCAGCAATGACTACCGCTCGGTGACCGAGCTGGGCGCCAAGCTGAACAGT CTGTTGGAAGAAGGCGCCTATGTGCAGAAGGGCGAGCGCAAGAAGGCCGTCAGCAGCTTCAAGGAAGCCCTGGAGTGGCTGATGACCGAAGGCACCAAGC GTCACAGCATCCAGCGATACAAAGGACTGGGCGAGATGAACCCGGACCAGCTGTGGGAAACCACCATGGACCCGAACGTGCGCCGCATGCTGAAGGTGAC CATCGAGGATGCCATCGCCGCCGACCAGCTGTTCAACACCCTGATGGGCGATGCCGTGGAGCCGCGCCGCGACTTCATCGAGAGCAACGCCCTGGCGGTG TCCAACCTGGACGTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TTCGGGAAAGCGACAGGCAAAAAGAAAGGGCCCTTCGGGGCCCTTTTCTTTTGTCGGCGTGAGCGTCAGGAGGCTTCGGCAACTGCCTGCGGCGTGGCAT CGGCCGGCAGCTCGCCCATCTCGCGCAGGGTCTGCGCAACCCAGTTCTCGGCGCGCTGGTTGAGCTCGGTAATGGCGCGTGCGCCCTCGCCTTCTGCATA CATGGCCGGGCCTATCACCACCTGGATGGTGCCGGGGAACTTCGCCCAGCCATTCTTCGGCCAGCAGTGCCCGGCGTTGTGTGCGATCGGCAGAACCGGC AGGTTGGCGTTGACCGCCAGTGCCGCGCCGCCACGGGAGAATTTGCCGATCTGGCCCGTGGGGACGCGGGTGCCTTCCGGGAAGATCAGTACCCAGGCGC CCTGCTTGAGGCGCTCGTCACCCTGTTTGGCGATCTGCTTGAGGGCCAGCTTCGGTTGCTCGCGGTTGATCGCAATGGGCTTGAGCAGCGCCATGGCCCA
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| Amino Acid Sequence |
>DNA gyrase subunit B
MSENTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEISITIHTDESITVRDNGRGIPVDIHKEEGVSAAEVIMTVLH AGGKFDDNSYKVSGGLHGVGVSVVNALSHELRLTIRREGKVWEQVYHHGVPQFPLRPVGDTEGSGTEVHFKPSPETFHNIHFSWDILAKRIRELSFLNSG VGIVLRDERAGKEELFKYEGGLRAFVEYLNTNKTAVNQVFHFNCQREEDGVGVEVALQWNDSFNENILCFTNNIPQRDGGTHLAGFRSALTRHLNNYIEQ EGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFADFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALD IAGLPGKLADCQEKDPALSELYIVEGDSAGGSAKQGRNRKTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDA DVDGSHIRTLLLTFFFRQLPELVERGYIYIAQPPLYKVKRGKQEQYIKDDVAMEEYMTQSALEEASVHVNESAPGLSGEALEKLVNEYRTVMRTLSRLSR LYPQDLTEHFVYLPRIDVDQLGDQAAMQGWLDQYQARLKAAEKSGLVYKVSLREDRERHLWLPEVEMVAHGLSSYVTFNRDFFASNDYRSVTELGAKLNS LLEEGAYVQKGERKKAVSSFKEALEWLMTEGTKRHSIQRYKGLGEMNPDQLWETTMDPNVRRMLKVTIEDAIAADQLFNTLMGDAVEPRRDFIESNALAV SNLDV
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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